Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan14g0133 ATGGGATGCAACAAAGAAGAAATTGAGCTTGGTTTCTCAAATATGTCCCAAGATGATATTCAAACAACACTAAGGAGTTTATTTCCAGAAGAATTTTATAGACAAACACAACCAATAATTGATCCAAATCAACCTTCATCATCTTCATCTTCTTTAAGATCATTATCCACAGGTAGCCCTGAATATTCATCATTGATATTCAATATTCATGGTACTTCTCAACCCAACTTTCCAGAAACTCTTAGAGGGGTAATTACTACAATGCCACTTGTGACACCAAACATAACAACAAGTTCAATACACCAACAAGTTCCTCAAATCACACTAAGTCCAATTCATCAATTACCCACACCAGAAAATGAACAAGATGCAATAATGAGAGCAATGTTATATGTTCTAACTTCACCTACTTCTTCAACTTCTCATCAGAAACAAACCCACCAAAACTTACCTTATACTAACCCAGAAACTAGTAGTGCTTTCAAGAGTTATAGGCCAAGTTTAGGACCAAATAACATGTCCTTAATCGGGTCGAATATTCGAAAACAAAGCATGATGAATAGATCATTTGTATTCTTTAGAAAGTTAAACTTGTCAAGAATGAGAGAACACATTCAAGCTACACATTCCAATAGTACACAGGTGCATCATATGATATCAGAAAGAAGAAGGCGTGAGAAACTTAATGAGAATTTTCAGGCACTTAGAGCATTACTTCCTCCAAAAACTAAGAAAGACAAAGCATCAATACTAACATCAGCAAAGGAGACATTGAAATCTTTGATGGTTGAAATTGAAAAGCTAAGTTTAAGAAATCAAGAGTTGGTGTCACTTGTGGCAACAAAAGAATCTAGTACCCAAGAAACAAAAGCTAGCTTCTCGTCAAATGAAAGATTGAATGTTCGAGTCTCACATATTCCACAATCGAACTCATCGGAAGAGAGAATGGTGGAATTGAAAGTCAATTTGAGAGGACAAGTTTCTCAAGTTGATATATTGATTGGCTTATTGGAATTCTTAAAGCAAACTCAGAATGTGAGCTTGATTTCAATGGAAGCAACACAAGGGAATGCACTTCATCAACTAAACTTCACACTAAGGATTGTTGAGGGAAGTGAATGGGACGAGTCTAGCTTAGAGGAAGCAGTGAGAAGAGTGGTTAGTGACTTGATACAATGGGAAGGGGACCAATAA 1194 0.361 MGCNKEEIELGFSNMSQDDIQTTLRSLFPEEFYRQTQPIIDPNQPSSSSSSLRSLSTGSPEYSSLIFNIHGTSQPNFPETLRGVITTMPLVTPNITTSSIHQQVPQITLSPIHQLPTPENEQDAIMRAMLYVLTSPTSSTSHQKQTHQNLPYTNPETSSAFKSYRPSLGPNNMSLIGSNIRKQSMMNRSFVFFRKLNLSRMREHIQATHSNSTQVHHMISERRRREKLNENFQALRALLPPKTKKDKASILTSAKETLKSLMVEIEKLSLRNQELVSLVATKESSTQETKASFSSNERLNVRVSHIPQSNSSEERMVELKVNLRGQVSQVDILIGLLEFLKQTQNVSLISMEATQGNALHQLNFTLRIVEGSEWDESSLEEAVRRVVSDLIQWEGDQ* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan14g0133 397 Pfam Helix-loop-helix DNA-binding domain 215 261 IPR011598 GO:0046983
Lan14g0133 397 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 1 390 - -
Lan14g0133 397 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 212 276 IPR036638 GO:0046983
Lan14g0133 397 Coils Coil 218 238 - -
Lan14g0133 397 Gene3D - 209 288 IPR036638 GO:0046983
Lan14g0133 397 Coils Coil 251 278 - -
Lan14g0133 397 MobiDBLite consensus disorder prediction 37 56 - -
Lan14g0133 397 CDD bHLH_AtbHLH_like 217 269 IPR045239 -
Lan14g0133 397 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 212 261 IPR011598 GO:0046983
Lan14g0133 397 SMART finulus 218 267 IPR011598 GO:0046983
Lan14g0133 397 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 1 390 IPR044658 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan14g0133 Lan-Chr14 1643156 1647525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan14g0133 1 390 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 40.094 6.39e-67 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan14g0133 HLH 5.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan14g0133 - - gmx:100807098 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0145 15 1656699 1662014 Lan14g0133 14 1643156 1647525 LSH
Lan1g1268 1 22491412 22495504 Lan14g0133 14 1643156 1647525 PCT
Lan14g0133 14 1643156 1647525 Lan1g1268 1 22491412 22495504 PCT