Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan14g0124 ATGGACGCCGCCGCTCACTACAACCCTCGCTCCGTCGAAGCCGTCTTCCGCGACTTCAAGGGCCGCAGGACCGCCCTTGTCAAAGCCCTAACCACCGATGTAGTGGAATTTTATCAGCAGTGTGATCCAGAAAAGGAGAATCTTTGTCTGTATGGTTTCCCCACTGAAAAATGGGAAGTTAATTTACCCGCTGAAGAAGTTCCTCCTGAACTTCCCGAGCCTGCATTGGGCATAAACTTTGCTAGGGATGGGATGCAAGAAAAGGACTGGCTTTCTTTGGTGGCTGTTCACAGTGATGCGTGGCTACTTTCAGTGGCTTTCTACTTTGGGGCAAGATTTGGTTTTGATAATGCTGATCGGAAACGCCTGTTCGCTATGATTAATGATCTGCCAACAATATTTGAGGTTGTGACTGGAACTGCGAAGAAACAGTCAAAGGAAAAGTCATCAGTTTCAAACCACACCAGCAACAAATCAAAGTCCGGCTCTAAAGGGCGAGGATCGGAGTCAAGGAAGTATTCAGAGCAAGCAAAAGATGAGGAGGAGGAGGAGGTGGTGGAGGAATTGGACGAAGATGAAGGACAATGTGGTGCATGTGGGGAGATTTACACATCTGAATCTGTTGAATTCTGGATTTGTTGTGACGTGTGCGAGAAATGGTTCCATGGTAAATGTGTGAAGATAACTCCTGCCAAAGCTGATCAGATCAACCATTATAAGTGCCCCTTATGCAGCAGCAATAAGAGAGCACGCCCTTGA 759 0.473 MDAAAHYNPRSVEAVFRDFKGRRTALVKALTTDVVEFYQQCDPEKENLCLYGFPTEKWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDNADRKRLFAMINDLPTIFEVVTGTAKKQSKEKSSVSNHTSNKSKSGSKGRGSESRKYSEQAKDEEEEEVVEELDEDEGQCGACGEIYTSESVEFWICCDVCEKWFHGKCVKITPAKADQINHYKCPLCSSNKRARP* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan14g0124 252 SUPERFAMILY FYVE/PHD zinc finger 189 247 IPR011011 -
Lan14g0124 252 CDD PHD_AL_plant 195 247 IPR044104 -
Lan14g0124 252 Pfam PHD-finger 196 246 IPR019787 -
Lan14g0124 252 MobiDBLite consensus disorder prediction 145 189 - -
Lan14g0124 252 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 3 252 - -
Lan14g0124 252 PANTHER CPG BINDING PROTEIN 3 252 IPR045104 GO:0006355|GO:0042393
Lan14g0124 252 SMART PHD_3 195 245 IPR001965 -
Lan14g0124 252 ProSitePatterns Zinc finger PHD-type signature. 196 244 IPR019786 -
Lan14g0124 252 ProSiteProfiles Zinc finger PHD-type profile. 193 247 IPR019787 -
Lan14g0124 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 251 IPR013083 -
Lan14g0124 252 Pfam Alfin 12 139 IPR021998 GO:0006355|GO:0042393
Lan14g0124 252 MobiDBLite consensus disorder prediction 164 179 - -
Lan14g0124 252 MobiDBLite consensus disorder prediction 145 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan14g0124 Lan-Chr14 1540809 1545012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan14g0124 3 251 Alfin-like Transcription Factor Family AT3G42790 70.916 7.74e-111 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lan14g0124 Alfin 9.6e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan14g0124 - - gmx:100500110 395.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0164 15 1810537 1815941 Lan14g0124 14 1540809 1545012 LSH