Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan14g0100 ATGCAGAAGAAGAGTGATAAACCCAATAAAGAAATAGCCGAAACAAAAAATAACGAGAAGAAGAAGGGTCAAATAATAAATAACAATAATGATGTTTTTTCTTCTTCCTCTTTCTCTAGCCTTGGTCTTCACCCTACTTTATGTCACCAACTCCACGAAAGAATGGGATTTGAAGCTCCAACGTTAGTGCAAGCTCAAGCAATTCCTGTTATTCTTTCAGGACGTCATGCATTGGTTAATGCTGCCACTGGTACTGGGAAGACTGTTGTGTATTTGGCTCCGATTATTCATCACTTGCAGAGTTATGAGAAACGAATCCAGCGTTCTGATGGAACATTTGCGTTGGTTCTTGTACCGACGCGTGAGCTATGTTTGCAGGTTTATGAAATTCTTCTGAAGTTATTGCACCGGTTTCATTGGATTGTTCCGGGATACCTTATGGGTGGTGAAAATAGATCAAAGGAAAAAGCCAGGCTCCGCAAAGGCATTTCAGTTCTCATAGCAACTCCTGGGCGCCTTTTGGATCATTTGAAGAATACAACTTCGTTCGTGTACACAAATTTGCGTTGGATAATTTTTGATGAAGCTGATCGAATTTTGGAATTAGGATTTGGAAAAGATATACAGGAAATATTAGATCTTTTAGGTTCAACGAAAGCAGAGAATGCAGTTCCAAGCCACTCTAAAATTCAAAGACAGAACTTGCTTTTATCTGCCACCTTAAATGAGAAAGTGAACCACCTTGCTAAAATTAGTTTAGAGAATCCAGTGATGATTGGTCTCGATGATAAAAGAGGAGAACCAATCTCGACAATTGAAAGCCTGGATACTTCAGGATCTGATGATGACAATGAAGGCAAGATTTCCATTAAAATACCAACAATTGGAGATTATAACGTCCCCACACAGTTGATTCAGAGATACATGAAAGTGCCTTGTGGTTCTCGCCTTCCTGTACTACTTTCACTTTTAAAGCATCTTTTTGATAAAGAACCTTCACAAAAGGTTGTGTTATTCTTTTCAACATGTGATGCAGTAGACTTTCACTATTCACTGTTAAGTGAATTCCAATTTTCATCCTATCCACAAACCGAAGGAGGGACGAAGCAGATGTTTATTGGATGCAAAACTTTCCGGTTGCATGGTAATATGGAACAAATAGACCGGAGAACGGCATTTCAGGCCTTTAAAACTGAGAAATCTGCTCTACTTTTGTCCACTGATGTTTCTGCTAGAGGCCTGGATTTTCCGAAGGTTCGATGTATTATACAATATGATTCTCCCGGAGAAGCTACTGAATACGTGCACAGAGTTGGTAGAACTGCTCGACTGGGTGAAAGAGGAGAGTCATTCTTATTTCTACAACCAATTGAAATAGATTATTTACAGGACTTGGAGAAACATGGTGTCTCACTAACCGAGTATCCTCTCCTCAAAGTGCTGGATAGTTTCCCCCTGCATGGACTAAAGAACCTAAAGAGGTCTGATTTCATAGATGCACATCCCTGGGTCCTCGGTCTCCAAAAGGCTCTTGAGTCCTTCATCATGTCCAAGCCTAAGATTGATGAACTTGCCAAGAAGGCATTTTGCTCTTGGGTCCGTGCATACACTGCCCATCGCGGTGACCTGAAAAGAATATTTATGATCAAGAAGCTTCATTTAGGGCATGTAGCAAAAAGCTTTGCATTGAAGCAACAACCCTCCTTAGTTGGACAGTCATTCCAAAAGCAAACTAAGAAGAGAAAGAGATTTGACAAGAAAAGCGGACTTCCAAAAAAGGTAAAATATTCAAACTCGACATAA 1803 0.4004 MQKKSDKPNKEIAETKNNEKKKGQIINNNNDVFSSSSFSSLGLHPTLCHQLHERMGFEAPTLVQAQAIPVILSGRHALVNAATGTGKTVVYLAPIIHHLQSYEKRIQRSDGTFALVLVPTRELCLQVYEILLKLLHRFHWIVPGYLMGGENRSKEKARLRKGISVLIATPGRLLDHLKNTTSFVYTNLRWIIFDEADRILELGFGKDIQEILDLLGSTKAENAVPSHSKIQRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKRGEPISTIESLDTSGSDDDNEGKISIKIPTIGDYNVPTQLIQRYMKVPCGSRLPVLLSLLKHLFDKEPSQKVVLFFSTCDAVDFHYSLLSEFQFSSYPQTEGGTKQMFIGCKTFRLHGNMEQIDRRTAFQAFKTEKSALLLSTDVSARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGERGESFLFLQPIEIDYLQDLEKHGVSLTEYPLLKVLDSFPLHGLKNLKRSDFIDAHPWVLGLQKALESFIMSKPKIDELAKKAFCSWVRAYTAHRGDLKRIFMIKKLHLGHVAKSFALKQQPSLVGQSFQKQTKKRKRFDKKSGLPKKVKYSNST* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan14g0100 600 CDD SF2_C_DEAD 304 454 - -
Lan14g0100 600 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 192 200 IPR000629 -
Lan14g0100 600 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 259 IPR027417 -
Lan14g0100 600 PANTHER ATP-DEPENDENT RNA HELICASE DDX31-RELATED 21 594 - -
Lan14g0100 600 SMART ultradead3 56 272 IPR014001 -
Lan14g0100 600 MobiDBLite consensus disorder prediction 572 600 - -
Lan14g0100 600 Pfam Domain of unknown function (DUF4217) 508 568 IPR025313 -
Lan14g0100 600 Pfam DEAD/DEAH box helicase 62 247 IPR011545 GO:0003676|GO:0005524
Lan14g0100 600 CDD DEADc_DDX31 50 260 - -
Lan14g0100 600 Gene3D - 1 261 IPR027417 -
Lan14g0100 600 MobiDBLite consensus disorder prediction 1 21 - -
Lan14g0100 600 MobiDBLite consensus disorder prediction 1 27 - -
Lan14g0100 600 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 323 492 IPR001650 -
Lan14g0100 600 SMART helicmild6 347 445 IPR001650 -
Lan14g0100 600 SMART DUF4217_3 506 571 IPR025313 -
Lan14g0100 600 Gene3D - 315 594 IPR027417 -
Lan14g0100 600 Pfam Helicase conserved C-terminal domain 324 445 IPR001650 -
Lan14g0100 600 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 36 65 IPR014014 GO:0003724
Lan14g0100 600 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 68 259 IPR014001 -
Lan14g0100 600 PANTHER RNA HELICASE 21 594 - -
Lan14g0100 600 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 461 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan14g0100 Lan-Chr14 1321595 1328240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan14g0100 36 477 Eukaryotic Initiation Factors Gene Family AT3G19760 25.056 7.86e-35 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan14g0100 K14806 - gmx:100805157 952.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan14g0100 14 1321595 1328240 Lan3g0977 3 21468209 21472778 LSH