LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan14g0050	ATGAAGCAGTCTCTTGATCCTTCATCTTTCGGTACTTCCATGTTTCGATCTATAAATATGCCTAGAGAAGCGGGGCGGGCTGCATGGGATGTTTTATCTGGATCCGATTCCTACCATGCCTCATCTGATGCTAGCCTCTTTTCTAGCTCATTACCTGTTCTTCCACATGAAAAACTGAACTTAAATGACATGAAAAACAGTTATCAATCATCTGGCTTTAAAAAGCACCACCAAGATATTCAGGGCAATGATTCACCTGAAGATGTTGACACTAATGCAATTGGAGTCATGCTTCCCGATGACGAGGAGGAACTATTAGCTGGTATAATGGATGATTTCGACCTAAGTGGTTTGCCTGGTTCTCTTGAGGACTTGGAAGAGTATGATCTTTTCGGTAGTGGCGGAGGCATGGAACTAGAAACTGACCCACAGGAAAGTCTCAGTGTGGGTCTGTCTAAGTTAAGCTTCTCTGATAGCACTGCTGGCAGTGGTTTGCCTCTTAATTCTTTTCCTAATGGTGTGGGAGCTGTTGTTGGAGAACATCCATTGGGAGAGCATCCATCTCGAACATTATTTGTGCGAAATATTAACAGTAATGTTGAGGATTCTGAGCTGAAAGTTCTTTTTGAGCAATATGGTGATATTAGAACCCTGTTCACTGATTGTAAACATCGGGGGTTTGTAATGATATCCTATTATGACATCCGTGCTGCTCGAACAGCCATGCGTGCATTACAAAACAAACCTCTTCGGCGCAGGAAACTTGACATTCACTTCTCAATACCAAAGGACAATCCATCAGACAAGGATATCAACCAAGGAACCTTGGTAGTTTTCAATTTGGATCCTTCGGTTTCAAATGAAGACCTCCGTCAAATATTTGGGGCTTATGGAGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCATAAGTTCATTGAATTTTATGATGTCAGAGCCGCAGAAGCTGCACTTAAGTCATTGAATAGGAGTGACATAGCTGGTAAACGCATAAAGCTGGAGCCTAGTCGCCCTGGAGGAGCTCGTCGAAATTTGATGCTCCAACTTAATCAAGATCTCGATCAAGATGAATCTCGGAGTTTCCGATATCAAGTGGGTTCTCCTGTGGCAAACTCTCCACCAGGTAATTGGTTCCAGTTTAGCAGCCCTGTTGAGCAGAATTCAATGCAAACTATGAATAATTCTCCCGGTTCTAGGATCATAGGCCCTAGAACAGGCAACCATTTTTCAGGATTAGCTTCAATTTTGCAACCTCAGGCATCAAACAATGTGAAGGGTGCAGCTATTGGCAAAGACTTAAGAACTAATAGTCATGAAGAGCACATATTTACCAGTATGAATTCAACAAATGGTACGACTTTTCAGTCACATTCACTTCCAGAGCCAAAGTTCAGCCAATATCGTGGACCTTTATCTTCTTTCGGTCAATCAACATCAAATGGATTGTCAATTGAGACCTTGTCTGGGCCACAGTTTCTATGGGGAAGTCCAACCCTCTACTCAGATCATATCAAACCTTCAGCTTGGCCAAGACCATCTGCAGGGCATCCATTTACCTCGAACGGAAAGAGTCATGCCTTCCCATATTCAACTCAGAATAATTCCTTCATTGGTTCATCCCAGCATCATCACGTTGGCTCTGCTCCATCTGGTTTGCCTTTTGAGCGGCGGTTCGGTTTTCTTCCCGAGTCACCTGAAACTTCATTCGTGAGTAATGCTAGTTATGGAGGTATGGGTCTAGGGAACAATGATGCAAATTACATGGTTAATATGGGTGGTTCTATTAATGCTGGGATTAATATGCCAAGAAATGTACCTGATAATGGTTCATCAAACTTCAGAATGAGATCTTCTCCTCGGCTTAACCCTGTGTTTTTGGGTAGTGGTCCTTACCCCGGACCGCTGCCCGCTACCTTCGAGAGTTTGACTGACCGTGCTCGTAGTAGATGGATAGATAACAATGGGAGTCAAGTTGATAGCAAGAAGCAATTTCAGCTCGACTTGGATAAGATTAAAAATGGCGAAGATGCAAGGACTACATTAATGTTAAAGAATATCCCTAATAAATACACCTCGAAAATGTTATTAGCCGCCATTGATGAAAATCACCAGGGTACCTATGATTTTATCTATCTGCCAATTGACTTTAAGAATAAATGCAACGTGGGTTATGCGTTTATCAACATGCTGTCACCTTTGCTTATTATTCCATTCTACGAGACATTCAATGGGAAGAAATGGGAGAAGTTTAACAGTGAAAAAGTTGCTTCTTTGGCATATGCTCGAATCCAAGGAAAGACCGCCCTTGTCAGCCACTTCCAAAATTCAAGTTTGATGAATGAAGATAAGCGCTGCCGCCCTATTCTCTTCCACTCAGAGGGTCCTGAAGCTGGTGATCAGATCATACAAGAGCATCTTCCTTCCAATAATCTAAATGTTCAGGAACATAGGCCAAGTGAGTTACATTCAAGTGATTTTCCGAAAAGTCCTCCAAATGATGGTTTTTCTGTGAGCTTGGAGACAAATTAA	2556	0.4237	MKQSLDPSSFGTSMFRSINMPREAGRAAWDVLSGSDSYHASSDASLFSSSLPVLPHEKLNLNDMKNSYQSSGFKKHHQDIQGNDSPEDVDTNAIGVMLPDDEEELLAGIMDDFDLSGLPGSLEDLEEYDLFGSGGGMELETDPQESLSVGLSKLSFSDSTAGSGLPLNSFPNGVGAVVGEHPLGEHPSRTLFVRNINSNVEDSELKVLFEQYGDIRTLFTDCKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQDLDQDESRSFRYQVGSPVANSPPGNWFQFSSPVEQNSMQTMNNSPGSRIIGPRTGNHFSGLASILQPQASNNVKGAAIGKDLRTNSHEEHIFTSMNSTNGTTFQSHSLPEPKFSQYRGPLSSFGQSTSNGLSIETLSGPQFLWGSPTLYSDHIKPSAWPRPSAGHPFTSNGKSHAFPYSTQNNSFIGSSQHHHVGSAPSGLPFERRFGFLPESPETSFVSNASYGGMGLGNNDANYMVNMGGSINAGINMPRNVPDNGSSNFRMRSSPRLNPVFLGSGPYPGPLPATFESLTDRARSRWIDNNGSQVDSKKQFQLDLDKIKNGEDARTTLMLKNIPNKYTSKMLLAAIDENHQGTYDFIYLPIDFKNKCNVGYAFINMLSPLLIIPFYETFNGKKWEKFNSEKVASLAYARIQGKTALVSHFQNSSLMNEDKRCRPILFHSEGPEAGDQIIQEHLPSNNLNVQEHRPSELHSSDFPKSPPNDGFSVSLETN*	852

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan14g0050	851	CDD	RRM3_MEI2_like	690	775	IPR034454	-
	Lan14g0050	851	MobiDBLite	consensus disorder prediction	834	851	-	-
	Lan14g0050	851	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	191	255	IPR000504	GO:0003723
	Lan14g0050	851	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	276	341	IPR000504	GO:0003723
	Lan14g0050	851	Gene3D	-	180	272	IPR012677	-
	Lan14g0050	851	CDD	RRM2_MEI2_like	273	343	-	-
	Lan14g0050	851	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	189	262	IPR000504	GO:0003723
	Lan14g0050	851	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	3	844	-	-
	Lan14g0050	851	SMART	rrm1_1	190	258	IPR000504	GO:0003723
	Lan14g0050	851	SMART	rrm1_1	689	765	IPR000504	GO:0003723
	Lan14g0050	851	SMART	rrm1_1	275	343	IPR000504	GO:0003723
	Lan14g0050	851	CDD	RRM1_MEI2_like	188	264	IPR034453	-
	Lan14g0050	851	SUPERFAMILY	RNA-binding domain, RBD	186	349	IPR035979	GO:0003676
	Lan14g0050	851	Gene3D	-	273	371	IPR012677	-
	Lan14g0050	851	Pfam	RNA recognition motif 2	687	783	IPR007201	-
	Lan14g0050	851	PANTHER	PROTEIN MEI2-LIKE 2	3	844	-	-
	Lan14g0050	851	SUPERFAMILY	RNA-binding domain, RBD	689	773	IPR035979	GO:0003676
	Lan14g0050	851	MobiDBLite	consensus disorder prediction	825	851	-	-
	Lan14g0050	851	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	274	347	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan14g0050	Lan-Chr14	764569	772751	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan14g0050	184	382	Eukaryotic Initiation Factors Gene Family	AT1G71770	25.561	2.51e-06	49.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan14g0050	-		-	lang:109328336	1496.87