Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan14g0033 ATGGGACGTGGAAAGATTGAGATAAAGAGGATCCAGAACACCACAACAAGGCAAGTTACCTTCTCAAAACGAAGAACTGGCCTTCTGAAAAAGACTCATGAGCTTTCCATTCTCTGTGATGCTCAAATCGGACTCATCATTTTCTCTAGTACTGGGAAAATGTATCAGTATTGCACTCAACCCTTCAGGATGGAGCATATCATTGAAAAGTACGAGAGAGCAACAGGAACTCCCATAATGGAACAAGATCACTTTGGGGATATGTTCAATGAAATGGCAATGCTGAGGCAAGAAACTCTTCGTCTTGAATTGGGAATTCAACGATATCTTGGAGATGACATAAATTGTTTACAATATGAGGATTTGACTAAACTTGAAGAAGAATTAGAAAAATCAGTGGCAAAGGTTCGAGACCGTCAGAATGAGCTCGTGCAACAGCAAATGGATAATCTTCAAAGGAAGGAAAGAATTTTGGAAGATGAAAACAGCAATTTATCCAATTGGATTCAGGAGCAGAGGGCAGTATTGGAATTTCAGCAGGCAGCAGTGGAAGCAAATAAACCAGTGCAGCATCAATTAATGGATCATTTCTCATTCTTTGAAGACCAACCTGCTAGTACTTTGCTTCAACTTGCTGCACCTGTTCTTCCACATCTTCACCCATATCTTCAGCTGGCACAGCCTAATATTCATCACTCCCCAGAGCCATAA 711 0.4079 MGRGKIEIKRIQNTTTRQVTFSKRRTGLLKKTHELSILCDAQIGLIIFSSTGKMYQYCTQPFRMEHIIEKYERATGTPIMEQDHFGDMFNEMAMLRQETLRLELGIQRYLGDDINCLQYEDLTKLEEELEKSVAKVRDRQNELVQQQMDNLQRKERILEDENSNLSNWIQEQRAVLEFQQAAVEANKPVQHQLMDHFSFFEDQPASTLLQLAAPVLPHLHPYLQLAQPNIHHSPEP* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan14g0033 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lan14g0033 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan14g0033 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan14g0033 236 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan14g0033 236 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Lan14g0033 236 Pfam K-box region 81 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan14g0033 236 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lan14g0033 236 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Lan14g0033 236 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 231 - -
Lan14g0033 236 Coils Coil 119 171 - -
Lan14g0033 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan14g0033 236 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan14g0033 236 PANTHER PROTEIN TRANSPARENT TESTA 16-LIKE ISOFORM X1 1 231 - -
Lan14g0033 236 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lan14g0033 236 Gene3D - 14 77 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan14g0033 Lan-Chr14 523113 526771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan14g0033 1 234 MADS-box Gene Family AT5G23260 46.215 4.28e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lan14g0033 K-box 3.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan14g0033 - - gmx:100783876 319.701