Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan14g0027 ATGGCTTTTCATCACAACGACCACGTACCTCACGAGATCAATTTCCAGTCTTACGCCGACGAGCAACAACACCTAACTCAAAACCGCGACATGCAGAGGCTACTACCATTCTCCGGCGGAGTCAGCGGCGGAGAACCACCGTCGTGGCTGAACAACGCAGCATCCAATCGTCAACAGAATTTCCTTCACCTACAACCAGACTCAACGGCGCAAAACGATGAGGTTCGTGGAATGATGGTGAAAAACATGGATCGGAACCAGCGTACGGAGAGTAATATGATGGAATCGGAGGAATTGATGGAATATAAAGCAGACATTCTGAGACACCCGCTTTATGAACAGATGTTGTCGGCACATGTTTCGTGTTTGAGGATTGCGACACCGGTGGATCAACTTCCTAGGATTGATGCTCAGCTTCAACAATCACAGCGCGTGGTGGACAAGTACTCTGGACTTGGAAATGCTGTGGTTGATGACAAAGACCTTGATCAATTCATGACTCATTATGTTCTATTGCTCTGCGCTTTTAAAGAACAATTGCAACAACATGTACGTGTTCATGCTATGGAAGCAGTTATGGCTTGTTGGGAGCTAGAGCAATCTCTACAAAGCTTGACCGGTGTATCTCCTGGTGAAGGAACAGGTGCTACAATGTCTGAAGATGAAGATGAGCAAGCAGAGAGCAATGGAAACTTATATGAAGGAAGCATGGAAGGTGGTGATAGTCTCAGTTTTGGCCCTCTTGTTCCCACTGAAAATGAAAGATCTTTGATGGAACGTGTGAGACAAGAATTGAAGCATGAGCTAAAAATGGGTTACAAGGACAAGATTGTGGACATAAGGGAAGAAATTCTAAGAAAGAGAAGAGCAGGGAAGCTCCCAGGAGATACAACCTCCCTTCTAAAAGCTTGGTGGCAATCACATTCTAAATGGCCCTATCCAACAGAAGAAGACAAGGCTAGGTTGGTGCAGGAAACAGGGTTGCAATTAAAGCAAATAAATAATTGGTTCATAAATCAAAGGAAAAGAAATTGGAATACTAATCCTTCATCTTCTAGTGGTTCCAAAACCAAGCGCAAGAGTGGTGCAGGTGAAACAAGTAACCAGAGCTTTATGTGA 1119 0.445 MAFHHNDHVPHEINFQSYADEQQHLTQNRDMQRLLPFSGGVSGGEPPSWLNNAASNRQQNFLHLQPDSTAQNDEVRGMMVKNMDRNQRTESNMMESEELMEYKADILRHPLYEQMLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSGLGNAVVDDKDLDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSEDEDEQAESNGNLYEGSMEGGDSLSFGPLVPTENERSLMERVRQELKHELKMGYKDKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWNTNPSSSSGSKTKRKSGAGETSNQSFM* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan14g0027 372 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 32 365 - -
Lan14g0027 372 Pfam KNOX1 domain 102 143 IPR005540 GO:0003677|GO:0005634
Lan14g0027 372 MobiDBLite consensus disorder prediction 341 372 - -
Lan14g0027 372 SMART KNOX1_2 100 144 IPR005540 GO:0003677|GO:0005634
Lan14g0027 372 Pfam Homeobox KN domain 304 343 IPR008422 GO:0003677|GO:0006355
Lan14g0027 372 Pfam KNOX2 domain 156 206 IPR005541 GO:0003677|GO:0005634
Lan14g0027 372 ProSiteProfiles ELK domain profile. 264 284 IPR005539 GO:0003677
Lan14g0027 372 SUPERFAMILY Homeodomain-like 286 350 IPR009057 -
Lan14g0027 372 CDD homeodomain 287 348 IPR001356 GO:0003677
Lan14g0027 372 SMART KNOX2_2 152 207 IPR005541 GO:0003677|GO:0005634
Lan14g0027 372 ProSiteProfiles 'Homeobox' domain profile. 284 347 IPR001356 GO:0003677
Lan14g0027 372 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 32 365 - -
Lan14g0027 372 MobiDBLite consensus disorder prediction 206 231 - -
Lan14g0027 372 SMART ELK_2 264 285 IPR005539 GO:0003677
Lan14g0027 372 SMART HOX_1 286 351 IPR001356 GO:0003677
Lan14g0027 372 Gene3D - 286 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan14g0027 Lan-Chr14 473405 481552 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan14g0027 102 369 Homeobox Transcription Factor Family AT5G11060 81.985 7.09e-164 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lan14g0027 KNOX2 2.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan14g0027 - - gmx:100816347 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1121 12 17610584 17615871 Lan14g0027 14 473405 481552 PCT
Lan14g0027 14 473405 481552 Lan12g1121 12 17610584 17615871 PCT