Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan14g0018 ATGGCATCAACATCTTGTGTTAGCCATATCCCATTAATCCCCATGAAAGAGTATCCTCCACCTCTTGCAAAATATGAGGAGGTTACAACAAATCCTAAGCTTTTCATGCTTACCTTGGAGAAGCTCCATGCTTCTATGGGTACCAAGTTCATGATTCCCATTATTGGGGGCAAAGAACTAGATTTGTGTCGCCTCTTTGTTGAAGTGACTTCTCGTGGAGGGATTGAGAAGATAATTAAAGAAAGAAGATGGAAAGAAGTGACTTCAGCTTTTAATTTTCCATCAACAGCTACAAATGCTTCCTTTGTTCTAAGGAAGTACTATTCTTCATTGCTTTATCACTATGAACAAATCTACTATTTCAAAGCCAATCAATGTAACCATGCAACTTATGGTGCTCTTCAAAATCAATCAACCATGCCATTTTCTAATCAATGGACGCAATTTTCGCAGACTTTGCCCGGAATTCAATCAGCTATCTTTCAACAATCAAAGGTTAATGCTGCTGATTTGTCTGAAGGTTCTCAAGTCCTTGGAGTTATTGATGGGAAATTTGAAAGTGGTTATCTAGTTACTGTTTCATTGGGTTTTGAGACACTCAAAGGTGTACTTTATGATGTTCCACAAATCCCTGTAATGCCATCATCACATTATCACAATGTTATGGCTAATAAGAACAGCGTTGCTTCTGCTTCATTGGGTGTCCATCGTCGCCGACGAAGGAAGAAATCGGAAATCAAAAGAAGAGATCCTTCCCATCCAAAACCCAACCGAAGTGGTTACAATTTCTTCTTTGCTGAGCAGCATGCAAGACTAAAACCACTACACCAAGCAAAGGACAGAGAGATTAGTAGGATCATTGGTGAACTTTGGAACAAGTTAAAAGAGCCTGAAAAACTAGTTTATCAAGAGAAGGCTATTAAGGATAAAGAGAGGTACAAAGCAGAAATGGAAGAATATTGTCTTAAACTGAAGACATGCAATGTTAACAATGATGCCATGCAACTACAACAAAGGCTTCCTGAACTAGATAATGCTTTGGTGGATGTGGATATAAAGTTGCATCAAAATGATACAGGTTCTCAATCTCCTGAAGATGAAAATGGCTCTAGTGGAAGTGATTATGAATATGATAAAGGTATAGAGAATGATATTAATATGATGGATGATTCTCATCATGGAACTTTGAGTTTAGATAAGTCTTCAAAGGAAGATAATTATGAGTCTTTTCACCATTGTGTGGAAGGTGGACATGAACAGGTTCAGAAGATGGGTGAGAACAAAAATATGATGCCATTGCTTTAG 1305 0.3785 MASTSCVSHIPLIPMKEYPPPLAKYEEVTTNPKLFMLTLEKLHASMGTKFMIPIIGGKELDLCRLFVEVTSRGGIEKIIKERRWKEVTSAFNFPSTATNASFVLRKYYSSLLYHYEQIYYFKANQCNHATYGALQNQSTMPFSNQWTQFSQTLPGIQSAIFQQSKVNAADLSEGSQVLGVIDGKFESGYLVTVSLGFETLKGVLYDVPQIPVMPSSHYHNVMANKNSVASASLGVHRRRRRKKSEIKRRDPSHPKPNRSGYNFFFAEQHARLKPLHQAKDREISRIIGELWNKLKEPEKLVYQEKAIKDKERYKAEMEEYCLKLKTCNVNNDAMQLQQRLPELDNALVDVDIKLHQNDTGSQSPEDENGSSGSDYEYDKGIENDINMMDDSHHGTLSLDKSSKEDNYESFHHCVEGGHEQVQKMGENKNMMPLL* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan14g0018 434 CDD HMGB-UBF_HMG-box 254 318 - -
Lan14g0018 434 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677
Lan14g0018 434 MobiDBLite consensus disorder prediction 229 260 - -
Lan14g0018 434 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677
Lan14g0018 434 Pfam HMG (high mobility group) box 254 320 IPR009071 -
Lan14g0018 434 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 15 389 - -
Lan14g0018 434 SMART hmgende2 253 322 IPR009071 -
Lan14g0018 434 MobiDBLite consensus disorder prediction 234 248 - -
Lan14g0018 434 MobiDBLite consensus disorder prediction 355 370 - -
Lan14g0018 434 Gene3D High mobility group box domain 237 333 IPR036910 -
Lan14g0018 434 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 15 389 - -
Lan14g0018 434 SUPERFAMILY ARID-like 26 125 IPR036431 GO:0003677
Lan14g0018 434 MobiDBLite consensus disorder prediction 355 379 - -
Lan14g0018 434 Gene3D - 21 137 IPR036431 GO:0003677
Lan14g0018 434 SUPERFAMILY HMG-box 242 326 IPR036910 -
Lan14g0018 434 SMART ARID_2 26 116 - -
Lan14g0018 434 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 254 321 IPR009071 -
Lan14g0018 434 Pfam ARID/BRIGHT DNA binding domain 33 116 IPR001606 GO:0003677
Lan14g0018 434 SMART bright_3 30 121 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan14g0018 Lan-Chr14 332709 338935 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan14g0018 1 354 ARID Transcription Factor Family AT1G04880 55.827 6.36e-118 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lan14g0018 ARID 3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan14g0018 - - mtr:MTR_7g005970 504.597