Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g1222 ATGGATGCTTGTGCTATGCTCAGCGGTGGCAGCAATAATAATAACATTGAAGATGGCAGCAATAACAACAATGGTAGTAGTCCTTTGACTAGTGCTTCTAATAACTCTAGTAACATCAGCAGTGAAGAGCATTTCCATTCTGGACAAAGGAAAATGGTGAGAAAGAGGATGGCTTCTGAGATGGAACCAACTCATACTATGTTGCCACATAGTGCTATCGGTAGTAGGTTTCCTCGTCGAAGCAGCAACAACAACAACATGTCATCGGTACTAATTTGCTCTTCTTTAGCTCCAGCTGTAGAAAAAGCAACTAGTTTTAATAACAACTCCCATTATAAAACTAGTTCTTCTTCAAGAGTAGATAATAACGTCCATGTTGTTCCAAACCCCACTACTCCCAACTACTCCACTATGCTACTACCTTCTTCTACAACCATCAATCCCAACTATAACACTATTCAGAGGCAGCAGCAAGATCAGAACCAACTTGCATCACCTGCAGTGTGTGTATTCTCGGGTTTGCCCCTTTTTCCTGCATCTCAGCAAATAATTCATCATCACAATAGTACTAGTACCAGTGCTAATGTTGAGGTGGCTACTTCTCCTTCCATGGAAGACAATAACAACAACTCAGCAGCCACTGATTGGATCGATGGTATATTGAAGGATCTTATCCATAGCTCCAACAGTATTTCCATTCCTCAACTCATCAGCAACGTTAGAGAGATTATATACCCTTGCAACCCCAACCTCGCTGTTGTTCTTGAATACAGGCTGCGTCTTCTCACCTCTCATGACAACACCTCTACTGCTCCAAATAACAACTCATCTAACCCTGCACCAGTTAGAAAAAACAATACTATCGAAGTGGGAGAGGGTTTGAACCAAAACCAGAGGCCCTTACCCTCAGGAGGTAATGTTATACATGATAATTGTCCACCATATTCTTCATCAGGTGCTGCTTCTGTAGTTATGAATCAGATGTTGTCCAATTGGGGTGTGCTTCCAATCACCCATGACGGAACTTGTTCGGTGTCTGCTACTGATTTACCAACTCATCATGATATAAGTCATCAAGAGGAATGTTGTGATATTGGTGGTAATGAAGCAGACACAACAAGAAAGAAGAAAGACGAAGAGGGGTTGCACCTGCTCAGTTTGCTGCTTCAATGTGCAGAAGCAGTATCAGTTGAGAATGTTGAAGATGCCAAGAAGATGCTCCTTGAGATATCCCAGCTATCAACACCATTCGGAACATCAGCGCAGCGAGTGGCAGCTTATTTCTCAGAAGCGATATCAGCAAGGCTAGTGAGTTCGTGTTTAGGAATATATGCGACCTTTCCATCAACAGTGGTGTCTCACAAGGTAGCATCAGCATACCAAGTGTTCAACGGGATCAGTCCATTGGTGAAATTCTCGCACTTCACAGCGAACCAGGCAATACAGGAAGCATTTGAGAGAGAGGAGAGAGTACACATAATAGATCTAGATATAATGCAAGGGTTGCAATGGCCAGGACTTTTTCACATACTGGCTTCAAGACCTGGTGGGCCCCCTTATGTTAGACTCACTGGTCTTGGCACTTCAATGGAGGCACTTGAGGCAACAGGTAACCGTTTGTCTGATTTTGCTAATAAACTTGGTCTTCCTTTTCAGTTCTCTCCTGTGCCTCATAAGGTTGGGAACCTTGATCTTGAGATACTCAATGTTAGTAAGACCGAAGCTGTTGCTGTCCATTGGTTGCAACATTCCCTCTACGATGTCACCGGCTCCGACACTAATACCTTGTGCCTTTTGCAGAGGCTGGCACCTAAAGTGGTGACGGTGGTAGAGCAGGAGCTGAGGAACGCAGGATCCTTCTTGGGAAGGTTTGTGGAAGCAATACATTACTACTCAGCGGTGTTTGATTCACTTGGGTGTAGCTATGGTGAAGAAAGTGAGGAGAGACATGTGGTGGAACAACAAGTATTATCGAGAGAGATTCGTAATGTAATTGCAGTTGGGGGCCCATCAAGGACAGGAGAGTTGAAGTTCCATAACTGGAGAGAAAAGCTTCAGCAGTGTGGGTTTAGAGGTATCTCATTATCTGGTAATGCTGCTACTCAAGCAAGTTTACTCCTTGGTATGTTCCCATCTGAAGGATATACCCTTGTTGAGGACAATGGCATTCTCAAACTTGGTTGGAAAGACCTTTGCTTGCTCACTGCTTCTGCTTGGAGACCTCCCTTCCACATCATTAATTAA 2244 0.4381 MDACAMLSGGSNNNNIEDGSNNNNGSSPLTSASNNSSNISSEEHFHSGQRKMVRKRMASEMEPTHTMLPHSAIGSRFPRRSSNNNNMSSVLICSSLAPAVEKATSFNNNSHYKTSSSSRVDNNVHVVPNPTTPNYSTMLLPSSTTINPNYNTIQRQQQDQNQLASPAVCVFSGLPLFPASQQIIHHHNSTSTSANVEVATSPSMEDNNNNSAATDWIDGILKDLIHSSNSISIPQLISNVREIIYPCNPNLAVVLEYRLRLLTSHDNTSTAPNNNSSNPAPVRKNNTIEVGEGLNQNQRPLPSGGNVIHDNCPPYSSSGAASVVMNQMLSNWGVLPITHDGTCSVSATDLPTHHDISHQEECCDIGGNEADTTRKKKDEEGLHLLSLLLQCAEAVSVENVEDAKKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATFPSTVVSHKVASAYQVFNGISPLVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGNRLSDFANKLGLPFQFSPVPHKVGNLDLEILNVSKTEAVAVHWLQHSLYDVTGSDTNTLCLLQRLAPKVVTVVEQELRNAGSFLGRFVEAIHYYSAVFDSLGCSYGEESEERHVVEQQVLSREIRNVIAVGGPSRTGELKFHNWREKLQQCGFRGISLSGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPPFHIIN* 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g1222 747 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 137 741 IPR005202 -
Lan13g1222 747 PANTHER PROTEIN SCARECROW 137 741 - -
Lan13g1222 747 MobiDBLite consensus disorder prediction 44 61 - -
Lan13g1222 747 MobiDBLite consensus disorder prediction 1 63 - -
Lan13g1222 747 MobiDBLite consensus disorder prediction 7 43 - -
Lan13g1222 747 Pfam GRAS domain family 385 740 IPR005202 -
Lan13g1222 747 ProSiteProfiles GRAS family profile. 375 740 IPR005202 -
Lan13g1222 747 Coils Coil 747 747 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g1222 Lan-Chr13 17778023 17781004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g1222 349 743 GRAS Transcription Factor Family AT5G41920 54.208 1.13e-140 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lan13g1222 GRAS 3.4e-122 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g1433 7 19756949 19759785 Lan13g1222 13 17778023 17781004 LSH
Lan11g1592 11 30698199 30701715 Lan13g1222 13 17778023 17781004 LSH