Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g1221 ATGGGCAACTGCGGTACTCGTGAGGAATCTGCTGTCATTTCCAATGTTCAAGTTCAACAATCTGCCTGTGCTACTAGTAGTAATAGTACAAAGAAGCAGCAACAGCAACACAATCGGTCCGTGTCAGATCCAATCGACTCATGTTCAACCCCAAGAGATGACGTCAGAAACAACAACACACTCCTTTATACACACGTCATTGCTTTCACCCTGTACGAGCTAGAGACTATAACTAAGAGCTTCCGCTCAGATTACATCCTAGGTGAAGGTGGATTCGGCATTGTATATAAAGGCTACATTGATGAGAATCTCAGGGTTGGTCTCAAATCTCTTCCTGTTGCCGTCAAGGTTCTCAACAAGGAAGGCCTTCAAGGACATCGAGAGTGGCTTACGGAAGTCAATTTTCTAGGGCAGCTAAGGCATCCCAATCTTGTTAAATTGATCGGCTACTGCTGCGAGGAGGACCACAGGCTGCTTGTCTATGAATTCATGTTTCGTGGAAGTCTAGAAAACCACCTTTTCCGAAAGGCAACTGTCCCTTTATCATGGGCTACAAGAATGATGATTGCTCTAGGAGCTGCCAAAGGACTTGCCTTTCTCCACAATGCTGAAAGGCCAGTAATCTACCGTGACTTCAAAACGTCTAATATATTATTGGACTCTGACTATACAGCCAAGCTTTCGGATTTTGGACTTGCTAAAGCAGGACCACAAGGTGATGAAACCCATGTATCCACCCGGGTCATGGGGACATATGGCTATGCTGCCCCTGAATATGTAATGACTGGCCACCTGACAGCCAGGAGTGATGTGTATAGCTTCGGAGTTGTCCTTTTGGAGCTCTTAACTGGAAGGAAATCTGTTGACAAGACAAGGCCTGGAAAGGAACAAAGCTTGGTAGACTGGGCACGACCAAAACTTAACGACAAAAGGAAGCTTCTACAAATAATTGATCCTAGATTGGAGAATCAATACTCAGTCAGAGCAGCACAGAAAGCATGTAGCTTGGCTTACTACTGCCTGAGCCAAAATCCCAAAGCCAGGCCACTAATGAGTGATGTAGTTGAGACATTGGAACCCTTACAAAGTTCTAGTGTTGGTGCAGGTGAAGTCTCATTGTCAGGATCAAATAGTGGAAATGGCGGTGGGCCATTCGCTATGAACAAAATCTCCGACTACCGGATGCGGCACAAGTTTTCAAACAATGTTGGCCCTGGTGCCACTTGTCGGTCTCCGAACCCAAATTGCTCACCTGGTGCTCCAGCAGCATGCCGAGTCAGATGA 1284 0.4618 MGNCGTREESAVISNVQVQQSACATSSNSTKKQQQQHNRSVSDPIDSCSTPRDDVRNNNTLLYTHVIAFTLYELETITKSFRSDYILGEGGFGIVYKGYIDENLRVGLKSLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEEDHRLLVYEFMFRGSLENHLFRKATVPLSWATRMMIALGAAKGLAFLHNAERPVIYRDFKTSNILLDSDYTAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSVDKTRPGKEQSLVDWARPKLNDKRKLLQIIDPRLENQYSVRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQSSSVGAGEVSLSGSNSGNGGGPFAMNKISDYRMRHKFSNNVGPGATCRSPNPNCSPGAPAACRVR* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g1221 427 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL8-RELATED 23 414 - -
Lan13g1221 427 MobiDBLite consensus disorder prediction 24 52 - -
Lan13g1221 427 Gene3D Phosphorylase Kinase; domain 1 46 163 - -
Lan13g1221 427 PANTHER OS01G0588500 PROTEIN-RELATED 23 414 - -
Lan13g1221 427 ProSitePatterns Protein kinases ATP-binding region signature. 87 116 IPR017441 GO:0005524
Lan13g1221 427 Gene3D Transferase(Phosphotransferase) domain 1 164 371 - -
Lan13g1221 427 Pfam Protein tyrosine and serine/threonine kinase 86 358 IPR001245 GO:0004672|GO:0006468
Lan13g1221 427 MobiDBLite consensus disorder prediction 406 427 - -
Lan13g1221 427 SUPERFAMILY Protein kinase-like (PK-like) 61 359 IPR011009 -
Lan13g1221 427 CDD STKc_IRAK 87 361 - -
Lan13g1221 427 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Lan13g1221 427 ProSiteProfiles Protein kinase domain profile. 81 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g1221 Lan-Chr13 17769099 17772473 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g1221 69 368 Glycoside Hydrolase AT3G07070 53.795 5.49e-108 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lan13g1221 PK_Tyr_Ser-Thr 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g1221 - - gmx:102662348 757.288