Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g1217 ATGGAAGAGAACCACGTTGGTGTTCCTCCTATATCAACGACGAGAGGAGTAGGATCAGATTCCTTATCTCCTTCCAACATTCTTCGCTCTCCTTTATCTGCCTTGTTGGAATATTCCGGCATTCTCCGTCACAACCCTATCCCTATCCCTATCCCTATCCATGTTCCTAATATTAGAGAATCAGCAGAAACAACAGCAGGAGCAGGAGCAGGAGCAGGAGAGGTTTCTATCAGGATCATTGTCCCCTCTGATTCTGAACCCCATCATCATCATCATAATCATCATCATCATCAACCATTCTCATCTCTTTCTTCTTCATCTTATCAGAGATATGATATTCAGCATGCCGCCCGCTGCCTTGAACAGATATTACCTTTCTCTTTACTTTTCTTGCTTCTCTTCATCCGTCAACATTTCCAAGGGTTCTTTGTTACAATTTGGATTGCTGCACTCCTTTTCAAGTCCAACGACATTGTACGCAAACAAACAGCTCTAAAGGGAGAAAGAAAAATGCATATCCTAATTGCACTTTCTATAGCTTTTACACTTCAAGTAATTGCTGTCTACTGGTGGTATCACAATCATGATCTTATCTATCCATTGCTCATGCTTCCTCCCACAGATATACCTCCTTTCTGGCATGCCTTCTTCATCATCATCCTCAACGATATTTTAGTCCGCCAAGCTGCCATGGTATTTAAGTGTATATTGTTGATGTATTTCAAAAACACTACACCCCGAAATTATCGTAAGCAGGGCCAATTGCTGACTTTAGTTGAGTATCTTCTTCTGCTCTACCGTGCCTTGTTGCCAACCCCAGTTTGGTATCGTTTCTTCCTCAACAAAGAATACGGAACCCTCTTTTCATCATTGATCACAGGATTGTATCTCACATTTAAGCTTACATCTGTTGTTGAAAAGGTGCAATCTTTCTTCGCTGCAGTGAAGGAATTGTCAATTAAAGAAGTGCACTATGGGGCTTATGCAACATCAGAGCAGGTCAATGCAGCTGGTGATCTTTGTGCTATTTGTCAGGAGAAGATGCATGTCCCAGTCTTACTTCGCTGTAAACACATTTTCTGTGAAGATTGTGTATCAGAGTGGTTTGAGAGGGAAAGGACCTGTCCACTGTGTAGGGCTTTGGTAAAACCTGCAGATCTCAAGTCATTTGGTGATGGTTCTACTAGTTTGTTTTTACAGTTCTTTTAA 1209 0.4152 MEENHVGVPPISTTRGVGSDSLSPSNILRSPLSALLEYSGILRHNPIPIPIPIHVPNIRESAETTAGAGAGAGEVSIRIIVPSDSEPHHHHHNHHHHQPFSSLSSSSYQRYDIQHAARCLEQILPFSLLFLLLFIRQHFQGFFVTIWIAALLFKSNDIVRKQTALKGERKMHILIALSIAFTLQVIAVYWWYHNHDLIYPLLMLPPTDIPPFWHAFFIIILNDILVRQAAMVFKCILLMYFKNTTPRNYRKQGQLLTLVEYLLLLYRALLPTPVWYRFFLNKEYGTLFSSLITGLYLTFKLTSVVEKVQSFFAAVKELSIKEVHYGAYATSEQVNAAGDLCAICQEKMHVPVLLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLKSFGDGSTSLFLQFF* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g1217 402 Pfam Zinc finger, C3HC4 type (RING finger) 339 382 - -
Lan13g1217 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 319 389 IPR013083 -
Lan13g1217 402 ProSitePatterns Zinc finger RING-type signature. 356 365 IPR017907 -
Lan13g1217 402 SMART ring_2 341 378 IPR001841 -
Lan13g1217 402 CDD RING-HC_RNFT1_like 340 379 - -
Lan13g1217 402 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 104 402 IPR044235 GO:0061630|GO:1904294
Lan13g1217 402 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 21 90 IPR044235 GO:0061630|GO:1904294
Lan13g1217 402 MobiDBLite consensus disorder prediction 1 23 - -
Lan13g1217 402 SUPERFAMILY RING/U-box 333 384 - -
Lan13g1217 402 ProSiteProfiles Zinc finger RING-type profile. 341 379 IPR001841 -
Lan13g1217 402 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 21 90 - -
Lan13g1217 402 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 104 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g1217 Lan-Chr13 17742517 17745276 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g1217 22 402 C3H Transcription Factor Family AT5G01960 64.649 0.0 547