Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g1196 ATGAGTTTCAGAGAAGGGAATGAATGTGAAGAATCAAAATCAGTGAGTCAAAATGAGTCACTTACAAATTCTCAGTTAACAGTTGATGAGAGTCTTCTGGTTGATCCCAAGTTATTGTTTATCGGCGATAAGATTGGTGAAGGAGCTCATGGCAAAGTTTATGAAGGAAGGTATCAAGACCAAATTGTTGCAATTAAAGTTCTGCATCGTGGGAGCACTTCAGAAGAAAGAGCTGCACTTGAAAATCGTTTTGCTCGGGAAGTTATCATGATGTCCCGTGTCCACCATGAGAATCTTGTTAAGTTTATTGGAGCTTGCAAGGATCCTCTTATGGTGATAGTTACCGAGCTATTACCAGGAATGTCACTGCGGAAATATTTAATGAGTATTCGTCCTAAACAATTAGAACTTCATGTGGCTATAAACTTTGCCCTTGATATTGCTAAAGCAATGGATTGGCTGCATGCCAACGGCATTATACACAGAGATCTAAAACCTGACAATCTGTTGCTTACAGCAAATCAGAAGTCTGTTAAACTTGCAGATTTCGGTCTTGCGAGAGAAGAATCTGTGACTGAAATGATGACTGCAGAAACTGGAACTTACCGTTGGATGGCACCAGAGTTGTACAGTACTGTGACATTGCGCCAGGGAGAGAAAAAGCACTATAACAACAAGGTTGATGTATATAGCTTTGGAATTGTTTTGTGGGAGTTACTAACAAACCGAATGCCTTTTGAAGGGATGTCTAACTTACAGGCTGCATATGCCGCTGCTTTTAAGCAAGAGAGGCCTAGTATTCCTGACGATATATCACCCGATCTCACGTTCATCATACAATCATGTTGGGTCGAAGAACCCAACATGAGACCAAGCTTTAGTCAGATCATCCGCATGCTCAACGCGTTTCTCTTCACACTCTCACCACTATCTCCTCCTTTGCCATCAGAACCTGACAACGATGAACCCGAAGCAGCAGCAACAACAGCAACAAGTAATGGTGCAATTACCGAGTTTTCTGCCCGGAACAAAGGAAAGTTTGCTTTTTTACGCCAATTGTTTTCTTCAAAGAGGACCAAGAACTAA 1086 0.4162 MSFREGNECEESKSVSQNESLTNSQLTVDESLLVDPKLLFIGDKIGEGAHGKVYEGRYQDQIVAIKVLHRGSTSEERAALENRFAREVIMMSRVHHENLVKFIGACKDPLMVIVTELLPGMSLRKYLMSIRPKQLELHVAINFALDIAKAMDWLHANGIIHRDLKPDNLLLTANQKSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPSIPDDISPDLTFIIQSCWVEEPNMRPSFSQIIRMLNAFLFTLSPLSPPLPSEPDNDEPEAAATTATSNGAITEFSARNKGKFAFLRQLFSSKRTKN* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g1196 361 MobiDBLite consensus disorder prediction 1 22 - -
Lan13g1196 361 ProSitePatterns Protein kinases ATP-binding region signature. 45 66 IPR017441 GO:0005524
Lan13g1196 361 PRINTS Tyrosine kinase catalytic domain signature 115 128 IPR001245 GO:0004672|GO:0006468
Lan13g1196 361 PRINTS Tyrosine kinase catalytic domain signature 153 171 IPR001245 GO:0004672|GO:0006468
Lan13g1196 361 PRINTS Tyrosine kinase catalytic domain signature 227 249 IPR001245 GO:0004672|GO:0006468
Lan13g1196 361 PRINTS Tyrosine kinase catalytic domain signature 271 293 IPR001245 GO:0004672|GO:0006468
Lan13g1196 361 PANTHER SERINE-THREONINE PROTEIN KINASE 3 335 - -
Lan13g1196 361 Pfam Protein tyrosine and serine/threonine kinase 41 300 IPR001245 GO:0004672|GO:0006468
Lan13g1196 361 SUPERFAMILY Protein kinase-like (PK-like) 37 319 IPR011009 -
Lan13g1196 361 Gene3D Phosphorylase Kinase; domain 1 27 118 - -
Lan13g1196 361 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 3 335 - -
Lan13g1196 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Lan13g1196 361 ProSiteProfiles Protein kinase domain profile. 39 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan13g1196 361 Gene3D Transferase(Phosphotransferase) domain 1 121 312 - -
Lan13g1196 361 CDD STKc_MAP3K-like 45 300 - -
Lan13g1196 361 SMART serkin_6 39 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan13g1196 361 MobiDBLite consensus disorder prediction 313 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g1196 Lan-Chr13 17589156 17593588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g1196 27 361 MAP Kinase Kinase Kinase AT5G01850 72.981 0.0 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lan13g1196 PK_Tyr_Ser-Thr 8e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g1196 - - gmx:100816708 574.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g1419 7 19691589 19695194 Lan13g1196 13 17589156 17593588 LSH