Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g1194 ATGGGCAACAATTATAGGTTCAAGTTATCAGATATGATTCCCAATGCTTGGTTCTATAAGCTCAAAGACATGGGAAAACTAAGAAAACAAACCTCAACAACAACAACAACAACAACATTAACATCTCAGTCTAGAAAGAAAAAACAATCTTCTCCAACACCAACCTCTTCAACCAAACATTCATCAAAACCAAAACAACCTCACCAATACTACAATCCTAGAAAGTCTTACTATTTTACAAGGGACCTTAACCTCAACACTTCACCACCAAATAACCAAAAAGTCTCAGACACCAATTTCCATGAACCTCCTAGAAAATCAACCAAACAAAGAGCCAAGAGAAGAAGTTCAAAATCTTCAAATTCACCTAAGCAATCATGTTCATCAACTCCACTTGATTTAGAGTTCAGAACAGACAGTGTTCTTCTTCCAAATGATGAGTCATTAGTATTATTTGATGAAATGGTTTCATTGTCAAATGATGATATCATTATAGATGTTGACAACAACTCTGTATCAAGAAAAGATGATAAGGTAGAAGGAGGGTATGATGATTCATTTTCTGAGCATGTTCTACCACCAATTCTAACAAAGCCAAGAACTAGATTCAATGATTTGGTTGGTCATGATGCAAAGAACAAGAACAAGAAGAAAACCAAACAAAAAAGTAGAATGGTCGCTGACGTGGACTTCGAATTAAGATTGATGACTTTGGACCCATCGAATGACTCAAGTTGCGTCAAATCATCGAATGTGGTGACTATGTGTAAATCCGACCTCGGGGAATCCGAGTCGATTAAAGGGTCTCTCAAAAATAAAATTGTGAATGAAGAGAATGCATCGATTAAAGAAATGACTAATAGTCCTAGTGTTGGTGGTGGTAGGAGATTGAGGCTTAGGATTAATTCACCTAGAGTTAGAAGCCGGAAAAGTGTGTCATCGGCGGCAAGCGGCCGGAGAAGCCTTTCGGATAGCTTTGCAATTGTGAAGTCATCATTAAATCCACAAAGGGATTTTAGAGAATCAATGATGGAGATGATTGAGCAGAACAATATAAAGAGTTCAAAGGATTTGGAAGATCTTCTAGCTTGTTACCTTTCTCTTAATTCAGATGAGTATCATGATCTTATTATCAAAGTGTTCAAGCAAATTTGGTTTGATTTGTTTTATAATGAGTAG 1179 0.3656 MGNNYRFKLSDMIPNAWFYKLKDMGKLRKQTSTTTTTTTLTSQSRKKKQSSPTPTSSTKHSSKPKQPHQYYNPRKSYYFTRDLNLNTSPPNNQKVSDTNFHEPPRKSTKQRAKRRSSKSSNSPKQSCSSTPLDLEFRTDSVLLPNDESLVLFDEMVSLSNDDIIIDVDNNSVSRKDDKVEGGYDDSFSEHVLPPILTKPRTRFNDLVGHDAKNKNKKKTKQKSRMVADVDFELRLMTLDPSNDSSCVKSSNVVTMCKSDLGESESIKGSLKNKIVNEENASIKEMTNSPSVGGGRRLRLRINSPRVRSRKSVSSAASGRRSLSDSFAIVKSSLNPQRDFRESMMEMIEQNNIKSSKDLEDLLACYLSLNSDEYHDLIIKVFKQIWFDLFYNE* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g1194 392 Pfam DNA-binding domain 1 51 IPR025830 GO:0003677
Lan13g1194 392 MobiDBLite consensus disorder prediction 29 69 - -
Lan13g1194 392 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 327 389 IPR006458 -
Lan13g1194 392 PANTHER OVATE TRANSCRIPTIONAL REPRESSOR 297 391 - -
Lan13g1194 392 PANTHER OVATE TRANSCRIPTIONAL REPRESSOR 4 224 - -
Lan13g1194 392 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 4 224 IPR038933 GO:0045892
Lan13g1194 392 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 297 391 IPR038933 GO:0045892
Lan13g1194 392 MobiDBLite consensus disorder prediction 79 98 - -
Lan13g1194 392 Pfam Transcriptional repressor, ovate 332 389 IPR006458 -
Lan13g1194 392 ProSiteProfiles OVATE domain profile. 328 387 IPR006458 -
Lan13g1194 392 MobiDBLite consensus disorder prediction 29 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g1194 Lan-Chr13 17563217 17564789 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Lan13g1194 Ovate 5.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g1194 - - lang:109359570 330.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan13g1194 13 17563217 17564789 Lan12g0182 12 2825574 2827229 PCT
Lan13g1194 13 17563217 17564789 Lan1g0712 1 16095228 16096646 PCT
Lan12g0182 12 2825574 2827229 Lan13g1194 13 17563217 17564789 PCT
Lan1g0712 1 16095228 16096646 Lan13g1194 13 17563217 17564789 PCT