Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g1172 ATGGGAGGGTGTTGTAGCCATGATGCTACTGTTAGAGGAAAGGTGAAAAGCGAGGTGGATAGTGGAGAATATGAGCATGATCATAGCTCTCATAGCACTCATGTCACATATGAACATGATGGATCAAGAGTCATATCAAAAGGATCCTCTATCTTTGTATCAATGGATTGCAAACAAGGTAAGAAAGGTGTTAATCAAGATGCATTGACAGTTTGGGAGGACTTCACTGGAGAAAAAGATATGATCTTCTGTGGCGTGTTCGATGGTCATGGTCCTCTAGGCCACAAGGTTTCGCGATACATTCGCGACAAGCTACCCTTAAAACTATCAGAAGCAATCAAAATGGCACAACAAAATGCTTGCAGATTTTATGATGCTAATGAATCAGAAAGTGGAAGTTATGATGATATCTATGATGGAAATAACCAAGGAATGTCCCTTGCTGCATGGGAGGGATGTTTTCTCAAGTCCTTTGATGAAATTGATCAAAACCTTGCTCAACAGATTAATACTGATAGCTATTGCAGTGGTAGCACTGCTGTAACTGTGATTAAACAGGGTGATCAACTGATAGTCGGAAATTTGGGCGATTCTCGCGCAATTCTTTGCACAAGAGGGGATAGAAATCAACTTATTCCGGTTCAACTTACTGTGGACTTAAAACCTGATATTCCAAGCGAAACATCAAGAATCATTAGTCGTGAAGGTAGAGTTTTCGCATCAGAAGAAGAACCAAATGTGTATAGAATATGGATGCCTGATGAAGACTGCCCTGGACTAGCCATGTCAAGAGGCTTTGGAGACTTTTGCATTAAAGATTATGGCCTCATCTCAACTCCTGATGTCTTTTATAGAAAACTTACTAATCAAGATGAATTTGTCGTTTTGGCAACCGATGGTGTATGGGATGTTCTCACAAACAGCGAAGTAATAAACATAGTTGCTTCAGCACCAAGGAAGTCCATAGCAGCGAAAGTGTTAGTTAAGCGCGCCGTACGAGCCTGGAGGTACAAATATCCGGGCTTCATGGTTGATGATTGTGCAGCCATATGCTTGTTTCTGGATGAGCAGCCTGTGTTATCTCAATCACAATCCAAATCCAATAGGATCATAAGCCATGAAATCCATAGAAATCGCAGCAAGCACCGCTTAAAATCGACTAGAAATGAAGAAACTGAAACAGTGGATGGCAAAGTTGGTTTAGAACTTGATGAAGAATGGAAAGCTCTTGAAGGATTTGTTAGATCCAACTCAATATCAAAACTTCCATGGATTTCTAAGAATATGAGTGAAGGGCAAGCATTGAAGTACTATAAGGGGGGTTAG 1326 0.4072 MGGCCSHDATVRGKVKSEVDSGEYEHDHSSHSTHVTYEHDGSRVISKGSSIFVSMDCKQGKKGVNQDALTVWEDFTGEKDMIFCGVFDGHGPLGHKVSRYIRDKLPLKLSEAIKMAQQNACRFYDANESESGSYDDIYDGNNQGMSLAAWEGCFLKSFDEIDQNLAQQINTDSYCSGSTAVTVIKQGDQLIVGNLGDSRAILCTRGDRNQLIPVQLTVDLKPDIPSETSRIISREGRVFASEEEPNVYRIWMPDEDCPGLAMSRGFGDFCIKDYGLISTPDVFYRKLTNQDEFVVLATDGVWDVLTNSEVINIVASAPRKSIAAKVLVKRAVRAWRYKYPGFMVDDCAAICLFLDEQPVLSQSQSKSNRIISHEIHRNRSKHRLKSTRNEETETVDGKVGLELDEEWKALEGFVRSNSISKLPWISKNMSEGQALKYYKGG* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g1172 441 CDD PP2Cc 51 354 IPR001932 -
Lan13g1172 441 PANTHER PROTEIN PHOSPHATASE 2C 65-RELATED 1 421 - -
Lan13g1172 441 Gene3D - 38 356 IPR036457 -
Lan13g1172 441 MobiDBLite consensus disorder prediction 18 39 - -
Lan13g1172 441 Pfam Protein phosphatase 2C 76 333 IPR001932 -
Lan13g1172 441 ProSiteProfiles PPM-type phosphatase domain profile. 52 354 IPR001932 -
Lan13g1172 441 SMART PP2C_4 42 352 IPR001932 -
Lan13g1172 441 PANTHER ALPHABET, ISOFORM E-RELATED 1 421 - -
Lan13g1172 441 SUPERFAMILY PP2C-like 44 356 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g1172 Lan-Chr13 17272110 17274980 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g1172 1 358 PP2C-type Phosphatase Gene Family AT5G01700 50.559 1.66e-122 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g1172 - - gmx:100783603 660.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g1405 7 19567026 19571424 Lan13g1172 13 17272110 17274980 LSH
Lan11g1667 11 32581800 32585508 Lan13g1172 13 17272110 17274980 LSH