Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g1159 ATGGCTACTCCCACAGCATATCTTCCTTCTGCAGCCTCACCTGAATGGTTAAACAAAGGAGATAACTCATGGCAAATGATAGCAGCTACACTTGTTGGTCTTCAAAGCATGCCAGGTCTTGTGATTCTCTATGCAAGTATAGTGAAGAAAAAATGGGCAGTGAATTCAGCTTTCATGGCTCTATATGCATTTGCAGCAGTTCTTATATGTTGGGTACTTGTAGGTTATAGAATGGCCTTTGGTGAAAAACTCTTACCCTTTTGGGGTAAAGGTGCTCCATCATTAGGTCAAAAGTTTCTCATAAAAAGAGCTATAGTACCTGAAACTATTCATTATTATAAAAATGGTACAATTGAGAGTAAAACTGAAGAACCCTTTTTTCCTATGGCTTCACTTGTTTATTTCCAATTCACTTTTGCTGCTATTACTGTTATTTTGTTAGCTGGGTCTGTACTTGGTAGAATGAATATCAAGGCTTGGATGGCTTTTGTTCCTCTTTGGCTTATCTTTTCTTATACTGTTGGTGCCTTTAGTCTTTGGGGTGGTGGATTTCTTTATCATTGGGGTGTTATTGATTATTCTGGTGGCTATGTTATTCACCTCTCTTCTGGAATTGCTGGTTTCACTGCTGCTTATTGGGTTGGACCAAGGTTGAAGAGTGATAGGGAGAGATTCCCACCAAACAATGTGCTGCTTATGCTTGCAGGTGCTGGTTTACTATGGATGGGTTGGTCAGGGTTTAATGGTGGAGCACCATATGCAGCAAACATGGTTTCTTCAATTGCTGTTTTGAACACAAACATTTGTGCAGCCACTAGCCTCCTTGTATGGACATGTCTCGACGTCGCCTTCTTCGGGAAACCGTCGGTCATCGGAGCTGTTCAGGGCATGATGACTGGACTAGTATGCATTACCCCTGGTGCAGGTATTGTGCAATCATGGGCGGCTATAGTGATGGGAATATTATCAGGTAGCATTCCTTGGTTCTCTATGATGATTCTTCACAAAAAGTCAAGTCTTTTGCAAAAGGTAGATGACACATTTGGTGTATTTCACACACATGCTGTGGCTGGGCTTTTGGGTGGGCTCCTCACAGGCCTATTAGCAGAACCAGCCCTTTGTAGACTCCAATTACCAGTCACTAACTCAAGAGGTGCATTCTATGGTGGAAATGGTGGCATGCAATTTCTTAAGCAATTAGTGGCAGCATTTTTTGTTATTGCATGGAACTTGGTATCCACCACCATTATTCTCCTTTTCATACAATTGTTCATACCATTGAGGATGCCCGACGAGCAATTGGAGATCGGCGACGACGCAGTTCATGGCGAGGAAGCCTATGCTCTATGGGGTGATGGAGAGAAATATGATCCAACTAGGCATGGTTCCATGAATATTGGTCATTCTTCATCACCTTATGTTAATGGTGCTAGAGGTGTGACCATAAATTTATGA 1455 0.422 MATPTAYLPSAASPEWLNKGDNSWQMIAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVLVGYRMAFGEKLLPFWGKGAPSLGQKFLIKRAIVPETIHYYKNGTIESKTEEPFFPMASLVYFQFTFAAITVILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAFSLWGGGFLYHWGVIDYSGGYVIHLSSGIAGFTAAYWVGPRLKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAANMVSSIAVLNTNICAATSLLVWTCLDVAFFGKPSVIGAVQGMMTGLVCITPGAGIVQSWAAIVMGILSGSIPWFSMMILHKKSSLLQKVDDTFGVFHTHAVAGLLGGLLTGLLAEPALCRLQLPVTNSRGAFYGGNGGMQFLKQLVAAFFVIAWNLVSTTIILLFIQLFIPLRMPDEQLEIGDDAVHGEEAYALWGDGEKYDPTRHGSMNIGHSSSPYVNGARGVTINL* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g1159 484 PANTHER AMMONIUM TRANSPORTER MEP2 1 481 IPR001905 GO:0008519|GO:0016020|GO:0072488
Lan13g1159 484 Gene3D Ammonium transporter AmtB like domains 6 450 IPR029020 -
Lan13g1159 484 ProSitePatterns Ammonium transporters signature. 192 217 IPR018047 GO:0008519|GO:0016020|GO:0072488
Lan13g1159 484 Pfam Ammonium Transporter Family 24 447 IPR024041 GO:0008519|GO:0016020|GO:0072488
Lan13g1159 484 PANTHER AMMONIUM TRANSPORTER 1 481 - -
Lan13g1159 484 PRINTS Rhesus blood group protein signature 136 152 IPR002229 GO:0005887
Lan13g1159 484 PRINTS Rhesus blood group protein signature 231 249 IPR002229 GO:0005887
Lan13g1159 484 PRINTS Rhesus blood group protein signature 262 284 IPR002229 GO:0005887
Lan13g1159 484 PRINTS Rhesus blood group protein signature 317 335 IPR002229 GO:0005887
Lan13g1159 484 PRINTS Rhesus blood group protein signature 355 371 IPR002229 GO:0005887
Lan13g1159 484 TIGRFAM amt: ammonium transporter 21 447 IPR001905 GO:0008519|GO:0016020|GO:0072488
Lan13g1159 484 SUPERFAMILY Ammonium transporter 16 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g1159 Lan-Chr13 17170225 17172930 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g1159 129 484 Inorganic Solute Cotransporters AT2G38290 77.285 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g1159 K03320 - gmx:100790119 857.825