Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g1138 ATGGAAATGGCTTCTAGTCCTCGCACTGTTGAAGAGATCTTCAAAGATTATAGCGCCAGAAGAATCGGTGTTGTTCGTGCTTTGACTCAAGATGTTGATGAATTTTATGGGCTCTGTGATCCAGATAAGGAGAACTTGTGCCTGTATGGACATCCGAATGAAACATGGGAAGTAACTTTGCCGGCAGAGGAAGTTCCACCGGAGCTCCCTGAGCCAGCTCTTGGAATCAATTTTGCTAGAGATGGCATGAACCGCAGGGACTGGCTGTCTCTTGTTGCTGTGCACAGTGATTCGTGGTTGCTTTCTGTGGCATTTTATCTTGGAGCCCGTCTTAACCGCAATGAAAGGAAACGCTTATTTAGCTTGATCAATGATTTTCCTACAGTTTTCGAAGTTGTTACTGACAGGAAACCGATTAAGGAAAAGCCCACTGTGGATAGTGGAAGCAAATCTCGAGGAAGCACCAAGAGATCCAGCGACGGGCAAGTTAAAAGCAACCCGAAGTTTGATGAGGAATATGAGGAGGAGGAGGAGGAAGAAGATGAGCATAGTGAAACCCCTTGCGGTAGTTGCGGCGGCAAATATTACAAGACAAGTGAATTTTGGATTGGCTGTGATATATGTCAGAGGTGGTTCCATGGAAAATGTGTGAAGATGACTCCGGCAAAAGCCGATAGCATAAGGCATTATAAGTGCCCTACATGCAGCTTAAGGAGGGGTAGACCCTAA 729 0.4582 MEMASSPRTVEEIFKDYSARRIGVVRALTQDVDEFYGLCDPDKENLCLYGHPNETWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDFPTVFEVVTDRKPIKEKPTVDSGSKSRGSTKRSSDGQVKSNPKFDEEYEEEEEEEDEHSETPCGSCGGKYYKTSEFWIGCDICQRWFHGKCVKMTPAKADSIRHYKCPTCSLRRGRP* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g1138 242 MobiDBLite consensus disorder prediction 140 189 - -
Lan13g1138 242 ProSitePatterns Zinc finger PHD-type signature. 188 235 IPR019786 -
Lan13g1138 242 SMART PHD_3 187 236 IPR001965 -
Lan13g1138 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 236 IPR013083 -
Lan13g1138 242 Pfam PHD-finger 188 236 IPR019787 -
Lan13g1138 242 PANTHER CPG BINDING PROTEIN 3 241 IPR045104 GO:0006355|GO:0042393
Lan13g1138 242 CDD PHD_AL_plant 187 238 IPR044104 -
Lan13g1138 242 MobiDBLite consensus disorder prediction 148 162 - -
Lan13g1138 242 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 3 241 - -
Lan13g1138 242 ProSiteProfiles Zinc finger PHD-type profile. 185 238 IPR019787 -
Lan13g1138 242 SUPERFAMILY FYVE/PHD zinc finger 176 240 IPR011011 -
Lan13g1138 242 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g1138 Lan-Chr13 16923072 16926353 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g1138 4 241 Alfin-like Transcription Factor Family AT5G05610 72.385 5.10e-112 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan13g1138 Alfin 5.3e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g1138 - - gmx:100793126 432.95