Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g1118 ATGCTTCAGATTCGGCTTAGTAAGGCTCCTGCCTCAGAAGGATCAGCAGGGGCAAAGCCGTCACCTATCGAGACTGTCATGGTTGCGTGCCCGGACCATCTTGTCCTTGCTGATCTCCCTGTTGCAAAGGGCATTGGAGGAGCTACTGCTGCTTCACATGTTAAAACCTTGGGACGTAGATCACGCCGCCAACTTGGTGAGCGAGTCCATTTCTGTGTTCGTTGTGATTTCCCAATTGCTATCTATGGGCGACTGAGCCCTTGTGAGCATGCCTTCTGTCTCGATTGTGCTAGAAGTGATTCATTGTGCTATCTGTGTGATGAACGAATCCAAAAGATTCAGACAATCAAAATGATGGAAGGAATCCTCATATGTGCAGCTCCTCACTGTCTGAAATCTTTCCTGAAGAAGGCTGATTTTGAATCGCATGTCCAAGACAGCCATGCTAACCTTCTCCGATCAAATGCAGACAAAGAAGATGGTAACGAGTCAGAGGTACAAAGTGTCAGGCAATCTACTGCTTCAGATTCCACTGCTCGGGGTCCCCAAAGGCCAGTTTTTTCTCCCACTTCAAACCCCCAGCTCCATGATCAGGAAGAAAAAACTCGTCGACAACCACCAAGAGATCAACCACCTTCATGGCCAAATATGCAGTCAAAGCTACCATATTTCGGTCAACAGCATCACCCTTCAGATGCCCCTTCAGGCTCCGTTGGAGGTTTTCAACAGGGGTTCCATCAACAAAGTTTTGATATACACCATCCGTCAAAAGAACCTTCGCAGTTTTCAGACAGGCAGCAATCAGTTGGTCCGGAGACCCAATTTCCAGTGTATTCACCAATGCACTCAGGCCAGCCTCCGAACAACCCCACACTGGTTACTTCGAACCCAATGCCGAACCCTCCTATGCCATTTGGTTACCCTCCTTACCCACTGGAAAGAGGTCAACCATTTTATGCTGCTGCTCCCTATGATAATATTCCTAGGCAGGACTCAGCTTCTGATATAAGTAGGGACCAGAGTTCATTACTTGGTTTCCCACAAGGCGGTGTCCCAAATTTTCCCGGAAATTATTCCCAGTCCTGGCATGCTGGAATGGGTGGGGTGCCTTTTGAACAAGGACAGGGTGGTATGGCAGTAGATCCAAGGGATGCCAAAGGTGTATTGGCAACACAGCCCGTGGCCGTCCAACCACCACCTCCGGCAGCGCCCCACATGTCACATATGAAACCGAATTACTATTCTAGTGAGGGTGGACATGATCATGGTCAGGGTTATGGGTGGCAGCAGCAGCACGATAACCGTGATAGCTTTGGTGGCCAAGGCTAG 1329 0.4929 MLQIRLSKAPASEGSAGAKPSPIETVMVACPDHLVLADLPVAKGIGGATAASHVKTLGRRSRRQLGERVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSDSLCYLCDERIQKIQTIKMMEGILICAAPHCLKSFLKKADFESHVQDSHANLLRSNADKEDGNESEVQSVRQSTASDSTARGPQRPVFSPTSNPQLHDQEEKTRRQPPRDQPPSWPNMQSKLPYFGQQHHPSDAPSGSVGGFQQGFHQQSFDIHHPSKEPSQFSDRQQSVGPETQFPVYSPMHSGQPPNNPTLVTSNPMPNPPMPFGYPPYPLERGQPFYAAAPYDNIPRQDSASDISRDQSSLLGFPQGGVPNFPGNYSQSWHAGMGGVPFEQGQGGMAVDPRDAKGVLATQPVAVQPPPPAAPHMSHMKPNYYSSEGGHDHGQGYGWQQQHDNRDSFGGQG* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g1118 442 MobiDBLite consensus disorder prediction 153 274 - -
Lan13g1118 442 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 411 IPR040383 GO:0016567|GO:0061630
Lan13g1118 442 MobiDBLite consensus disorder prediction 394 442 - -
Lan13g1118 442 MobiDBLite consensus disorder prediction 1 20 - -
Lan13g1118 442 MobiDBLite consensus disorder prediction 214 250 - -
Lan13g1118 442 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Lan13g1118 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 120 IPR013083 -
Lan13g1118 442 ProSitePatterns Zinc finger C2H2 type domain signature. 125 148 IPR013087 -
Lan13g1118 442 MobiDBLite consensus disorder prediction 427 442 - -
Lan13g1118 442 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI 1 411 - -
Lan13g1118 442 MobiDBLite consensus disorder prediction 166 195 - -
Lan13g1118 442 CDD RING-HC_HAKAI_like 70 106 IPR040380 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g1118 Lan-Chr13 16687313 16691279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g1118 1 367 C2H2 Transcription Factor Family AT5G01160 50.000 5.80e-106 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g1118 K15685 - gmx:100817582 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g1360 7 18811968 18823795 Lan13g1118 13 16687313 16691279 LSH
Lan11g1716 11 33485095 33487777 Lan13g1118 13 16687313 16691279 LSH