Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g1112 ATGGGTGGTGTTGCATGGACAGAAGAAGAAGATCATATGCTTAAGAAATGCATTGAACAATATGGAGAAGGAAAGTGGCATAGAGTTCCTCTTTTGGCTGGTCTAAACAGGTGCAGAAAGAGTTGCAGGCTAAGATGGTTGAACTATCTCCGTCCTAACATCAAAAGAGGAAGTTTTGCAGAGGAGGAAGTGGAAATGATTATTAAACTTCATAGATTATTAGGCAACAGGTGGTCACTAATTGCAGGAAGACTACCAGGAAGAACTGCAAATGATGTAAAGAACTATTGGAATTGTCATCTGAGTAAGAAACTGAATGCTCTAGAAGCCAAGAACACAAAAATGAACAGAAACATTGAATCCATTAGGCCAAATCAACCAAGAATCATTATTGGTTCAAGCTCACTAAAGAGAAGGAGCTTGCAAAGTGAGTCTTCAACTGAACAAGGAACTCAACAACAAGAAAGTGCTATTTCCTCTTTAACATTTGATCCTGAAAGAGAGAGCCATATTCTTGAACCACAACAAGAAAACATGTATTCATGTTTGGACCAACAAGGTATTATTGATGAGTTACCAATGGATTTCAAATATGAAGGTGTTGATGCAATGAATAGTGGAGTGGGTAGTAGTAGTAGTACAAATCAATGGGATTGGGATGATTTACTCTTAGATATGGATTTGTATAATGGGTTTTCTTCTTAG 705 0.3745 MGGVAWTEEEDHMLKKCIEQYGEGKWHRVPLLAGLNRCRKSCRLRWLNYLRPNIKRGSFAEEEVEMIIKLHRLLGNRWSLIAGRLPGRTANDVKNYWNCHLSKKLNALEAKNTKMNRNIESIRPNQPRIIIGSSSLKRRSLQSESSTEQGTQQQESAISSLTFDPERESHILEPQQENMYSCLDQQGIIDELPMDFKYEGVDAMNSGVGSSSSTNQWDWDDLLLDMDLYNGFSS* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g1112 234 ProSiteProfiles Myb-like domain profile. 6 50 IPR001005 -
Lan13g1112 234 PANTHER MYB TRANSCRIPTION FACTOR 5 230 - -
Lan13g1112 234 Gene3D - 58 126 - -
Lan13g1112 234 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Lan13g1112 234 Gene3D - 4 55 - -
Lan13g1112 234 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 230 - -
Lan13g1112 234 SUPERFAMILY Homeodomain-like 5 97 IPR009057 -
Lan13g1112 234 Pfam Myb-like DNA-binding domain 5 50 IPR001005 -
Lan13g1112 234 Pfam Myb-like DNA-binding domain 56 98 IPR001005 -
Lan13g1112 234 SMART sant 2 52 IPR001005 -
Lan13g1112 234 SMART sant 55 103 IPR001005 -
Lan13g1112 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 50 IPR017930 -
Lan13g1112 234 CDD SANT 61 101 IPR001005 -
Lan13g1112 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Lan13g1112 234 MobiDBLite consensus disorder prediction 136 159 - -
Lan13g1112 234 CDD SANT 5 50 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g1112 Lan-Chr13 16624050 16625771 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g1112 5 121 MYB Transcription Factor Family AT1G66370 69.231 7.98e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan13g1112 Myb_DNA-binding 3.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g1112 K09422 - gmx:100798101 332.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1726 11 33637073 33638508 Lan13g1112 13 16624050 16625771 LSH