Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g1106 ATGGATGAGCAAGGTCAATATAAGATGTGCACCAAAAGAAAATACTCAATGACGTCTAACCATACTTCTTCTTCACCAAATAATAATGATTACCCCTCTTCCTATGATGATTCATCATGGGAAGAACAAGCTTTTGCAAAAGATGCAGCTGGGCTTGGTTGCATATGGCCACCAAGATCATATTCTTGTAGCTTTTGCAGAAGAGAGTTCAGGTCAGCACAGGCTCTAGGTGGCCATATGAATGTTCATAGAAGGGATAGAGCAAGACTAAATCAGCAACCATCTAGCCCCAAACAAAATGAAATTCTGAATCATCAAGTTCAAAACCCTTTAACCTCAAGTTACCTATACCCATCTTCTTCACTTTTTGGATTGGCCAATACAAACAACACTAACCCTAACTATTCTGATCCTCCTCATGATCTTGCTTCATCTTCTAAGGTTTTAACCCCATCAGTTAATAAGAATTTTAGAGAAGAAACCTTGAGTATTCCACTTTATAATTCTTCTATTTTCCATAAGACATATCCTACTCTTTCTTCTAACTCCTTGTCAAATCAAGCTGAACCTTGTGTTGACAGAATCTCCAAGGGATGGAATAATGATAATACTGATGTGGCTGTGAGCTTCAACTTGAACTTTGTGTGTAGAGCTTACACACCTATGCAGTTTGAGACTAAAGAAGAAGATTTATTAAGTTTCAAGAAGAAGAGAAAGGATGCATCAAATCCATTCTTCCCAAAATCAGGTTCAGTTGAAACACATCAAAAGCAGTCACATATGTTTGAATTTAGCCCTAGCTCCATAGAAGAGCTGGATCTGGAGCTAAGGCTTGGATACAGGTCCAAGGTATAG 855 0.3825 MDEQGQYKMCTKRKYSMTSNHTSSSPNNNDYPSSYDDSSWEEQAFAKDAAGLGCIWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLNQQPSSPKQNEILNHQVQNPLTSSYLYPSSSLFGLANTNNTNPNYSDPPHDLASSSKVLTPSVNKNFREETLSIPLYNSSIFHKTYPTLSSNSLSNQAEPCVDRISKGWNNDNTDVAVSFNLNFVCRAYTPMQFETKEEDLLSFKKKRKDASNPFFPKSGSVETHQKQSHMFEFSPSSIEELDLELRLGYRSKV* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g1106 284 PANTHER OS07G0101800 PROTEIN 3 283 - -
Lan13g1106 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 88 IPR013087 -
Lan13g1106 284 MobiDBLite consensus disorder prediction 1 37 - -
Lan13g1106 284 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Lan13g1106 284 MobiDBLite consensus disorder prediction 11 37 - -
Lan13g1106 284 MobiDBLite consensus disorder prediction 128 147 - -
Lan13g1106 284 SMART c2h2final6 61 83 IPR013087 -
Lan13g1106 284 SUPERFAMILY beta-beta-alpha zinc fingers 58 88 IPR036236 -
Lan13g1106 284 Gene3D Classic Zinc Finger 58 113 - -
Lan13g1106 284 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 3 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g1106 Lan-Chr13 16498189 16499609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g1106 37 92 C2H2 Transcription Factor Family AT2G37740 80.357 2.45e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan13g1106 zf-C2H2_6 1.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g1106 - - gmx:100810800 257.684
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1748 11 34061302 34062241 Lan13g1106 13 16498189 16499609 LSH