Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g1101 ATGATGTTGAATCATAGTGAAGATGATGATATGCTGTATGAACAACTATGGAAAGCATGTGCAGGACCCCATGTTGATGTTCCTCATGTTGGTCAAAGGGTCTTTTATTTTCCTCAGGGACACATGGAACAATTAGAAGCATCAACAAATCAGGAACTAAATCAGAGGATTCCCTTGTTCAATCTTCCAACCAAGATCCTTTGTCGTGTCATCAATGTCAATTTATTGGCTGAATCAGAAACAGATGAAGTTTATGCACAGATTACTTTGGTTCCAGAATCTAATCAAGCTGAGCCTACAATTCCTGATCCATGCCCTGCTGAAGTTCCAAGGCCAACAATTCATTCATTCAGCAAAGTCTTAACTGCCTCTGATACCAGCACTCATGGTGGCTTCTCTGTTCTTAGGAAACACGCCACGGAATGCCTTCCGGCTTTGGACATGTCCCAGTCAACCCCAACTCAGGAATTGGTTGCTAGGGATCTTCATGGTTACGAATGGCGCTTTAAGCATATATTTAGAGGTCAGCCTCGTCGACACTTGCTCACAACGGGATGGAGTACTTTTGTGACTTCCAAGAGATTAGTTGCTGGAGATACCTTTGTGTTTCTGAGAGCTGACAATGGAGAATTGCGCGTTGGAGTGAAGCGTCTTGCTCCTCAACAAAGCAGCATGCCATCATCTGTGATTTCCAGTCAGAGCATGCACTTAGGAGTTCTTGCAACTGCATCTCACGCTGTTGCAACTCAAACTCTTTTCTTAGTATATTATAAGCCAAGGACGAGCCAGTTCATCATAAGCGTCAACAAATATTTGGAGGCTGTCAAACATAAATTTGATGTTGGTTTGAGGTTCAAAATGAGATTCGAAGGAGATGATTCTCCCGAGTCTGACAAAAGATTTTCAGGCACAATAGTTGGAGTAGAAGATATTTCTCCTCAATGGATAAATTCAAAATGGCGATCGCTTAAGGTTCAATGGGATGAATCTGCATCTGTTCCAAGACCAGATAGGATTTCACCTTGGGAGATTGATCCTCTTCTGGCTTCTGTTCCTGCACCTTCTGCTCAACTTGTTGTTGTAAAGAATAAAAGGCCTCGACCACCCAGTGAAATTCCGGATCTTGTAGACACAACAGGAGCTGCCTCAGCTTTCTGGAATGCTGGGATGACACCGCCGAATCTACAATTTAGTGCTATGGGTGAAAGCAAAAGGAGTGAAAATAACCATATGTGGCATCATAAGCAGATTGATAATAGTAAAAGCGGCTGCAATGCTATTTCAAGGAATCAGGCGGACGGAATTTGGCAATCTTCTCCTCATTCTAGTGTTCCTTCTAATTTATTTTATGACACGACCGATGACAGCAAGAGTGTATCAGCTTGGCCTAATTCGAAAACTCATTCAGAAAAACTGAATAATGATAATTTGCGTGATCAAGTTGACAAGGAGAACAAAGTAGAGGGTGCTACAAGCTGTAGATTGTTTGGAATTGAGCTTATTGGTCATACTAAGAACTCTCCTGCTATAGATGGAGCATCTGTACATGCAGAAAATGTATCCGGTGTCTCGAACGAGGGCTGTGTTAGCACCTTGTCCAAAACTGATGCAGACCATAATTCTGATCTCTCAAAGGTATCTGAAGAGAGGAACCAAGAACAGTTGCAAGTGTCGCCGAAAGAGACTCAAAGCAAGCAAATCTGTAGCAGAAGTTGCACCAAGGTTCAAATGCAGGGTATTGCAGTGGGCCGTGCCGTGGACTTGACCATGTTGGACGGGTATGATCAACTTATAGATGAATTAGAGAAGATGTTTGACATAAAGGGACAGCTTCAACTCAGGAACAAGTGGGAAATTGTCTTCACTGATGATGAAGGGGATATGATGCTTGTCGGCGATGATCCGTGGCCTGAATTCTGTAACATGGTGAAAAGAATCTTCATTTGTTCGAGCCAGGATGTGAAGAAAATGAGCTCCGGGAGCAAACTGCCTCTATCTTCTTCAACAGAAGATGAAATTGTATTAAGCTCAGACACAACTGAGACATGA 2049 0.4275 MMLNHSEDDDMLYEQLWKACAGPHVDVPHVGQRVFYFPQGHMEQLEASTNQELNQRIPLFNLPTKILCRVINVNLLAESETDEVYAQITLVPESNQAEPTIPDPCPAEVPRPTIHSFSKVLTASDTSTHGGFSVLRKHATECLPALDMSQSTPTQELVARDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRADNGELRVGVKRLAPQQSSMPSSVISSQSMHLGVLATASHAVATQTLFLVYYKPRTSQFIISVNKYLEAVKHKFDVGLRFKMRFEGDDSPESDKRFSGTIVGVEDISPQWINSKWRSLKVQWDESASVPRPDRISPWEIDPLLASVPAPSAQLVVVKNKRPRPPSEIPDLVDTTGAASAFWNAGMTPPNLQFSAMGESKRSENNHMWHHKQIDNSKSGCNAISRNQADGIWQSSPHSSVPSNLFYDTTDDSKSVSAWPNSKTHSEKLNNDNLRDQVDKENKVEGATSCRLFGIELIGHTKNSPAIDGASVHAENVSGVSNEGCVSTLSKTDADHNSDLSKVSEERNQEQLQVSPKETQSKQICSRSCTKVQMQGIAVGRAVDLTMLDGYDQLIDELEKMFDIKGQLQLRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVKRIFICSSQDVKKMSSGSKLPLSSSTEDEIVLSSDTTET* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g1101 682 Gene3D - 278 351 - -
Lan13g1101 682 SUPERFAMILY DNA-binding pseudobarrel domain 108 246 IPR015300 -
Lan13g1101 682 MobiDBLite consensus disorder prediction 530 561 - -
Lan13g1101 682 CDD B3_DNA 115 217 IPR003340 GO:0003677
Lan13g1101 682 Pfam Auxin response factor 243 324 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lan13g1101 682 Gene3D - 114 218 IPR015300 -
Lan13g1101 682 SUPERFAMILY CAD & PB1 domains 573 646 - -
Lan13g1101 682 ProSiteProfiles PB1 domain profile. 570 651 IPR000270 GO:0005515
Lan13g1101 682 SMART B3_2 117 219 IPR003340 GO:0003677
Lan13g1101 682 Gene3D - 566 658 - -
Lan13g1101 682 PANTHER AUXIN RESPONSE FACTOR 4 670 - -
Lan13g1101 682 MobiDBLite consensus disorder prediction 658 682 - -
Lan13g1101 682 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 4 670 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lan13g1101 682 Pfam B3 DNA binding domain 117 216 IPR003340 GO:0003677
Lan13g1101 682 ProSiteProfiles B3 DNA-binding domain profile. 117 219 IPR003340 GO:0003677
Lan13g1101 682 Pfam AUX/IAA family 616 654 IPR033389 -
Lan13g1101 682 Pfam AUX/IAA family 552 606 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g1101 Lan-Chr13 16440858 16456418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g1101 10 663 B3 DNA Binding Superfamily AT4G23980 58.333 0.0 717
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lan13g1101 AUX_IAA 2.8e-13 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g1101 K14486 - gmx:100779003 1040.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g1321 7 18332375 18337605 Lan13g1101 13 16440858 16456418 LSH