Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g1086 ATGAGATATATGGAGTGCAGGGTGGAGTTAGAAGGAGTAGATCTGCATGCATCAGGAGTAGTGGTTAATGAGAACAATAATATTATGAATAACCACCACCACCACCTTGTTGTTGGATTTGAAGAAACTATGGCTGCTGCTGAGAGAGATATTTGGCTAAATGGTAATGATGATGATGATCTACTTGGTGTGAATGATCCTTCTATGTTCTATGCTGATTTTCCTCCTCTCCCTGATTTCCCATGCATGTCTTCATCTTCTTCTTCTTCATCAACTCCAGCACTTCCTGTTAAGACCACAAATTGCACCACCACCACCACCAGAACCACCTCGTCGTCTTCGTCGTCTTCCGCCGCATCTTGGGCTGTTTTGAGATCAGATTTTGAGGAAAATCTTGAACAGAATAACTACAACTGTTGCATGCAGAATGAACATCAGCAACAGCATGATCATAATCAGCATGATGTATATGATATAGGGCCTGCAGGTTTGTCCTCAAATGCCTCTATGGAGGTTTCTCAACAGCATCATTACCTTAACCACCAACAACAAAACCATGATCCTTGTCTTGATGGTACTGTTGGAGATTGCATGGATGAAGTGATGGATTTTGGATACATGGAGCTTTTTGAAGGGAATGAGTTCTTTGACCCAGCATCTATTTTCCAAAGTGAAGAAAACCCTTTAGTGGAATTCACACAGGTTCAGACTGTGCCACAACAAGAGGAACATCAGCATGCAATGTTAACACATCATTATCAGGAATCTACACTACTACAACATCAAGGGGTGACAAATGAGGAAGATAATGATCATCATAATCAGGCTCTTATGTGTGCAAAGACTACCAACAACAACGATGTAGAGATTGTCCAAGGAGAAGCTGATGCAACTGGTGCTGGTGTAGATGATGAAATGAGTAGTGTTTTCTTGGAGTGGCTCAAGTCTAACAAGGATAGTGTCTCTGCTAATGATTTGAGGAGTGTGAAGCTGAAAAAGGCAACAATAGAAAGTGCTGCAAAACGTTTAGGTGGAGGTAAAGAAGCCATGAAACAATTGTTGAAGCTTATTCTTGAGTGGGTTCAAACTAGTCATCTTCAGAATAAAAGGCGAAAGGAGAGTAATGAATCAGATCTACTCACACAATTTCAGGATCCTATTCAAAGCCAAAACAGAAAAAACACTAGTTCCAATCTGCATGTTGCACCTGATCAATCAAACACTTGTTTCAACCAAACACCTTGGGTTTCTGTGTCTCAACAAAACTATGGAACAGCAACAGATCAAGCTCCTCTTATGACAGTGCCTCAATCATTTCCACAACAAATGGTTGGTGGTTATTTGGGTGATCCTTACACAAATGGTGGCACCGCTTCAAATAATCACAACCCTTATCAACCTAGTGCTGAATATCAAATGCTGGAATCAGCACCTACATGGCCTCCTTCTCAGTTTACTACTGTTGCTAATTCTCAATATAATCAGTCATTTGGGGACAGCAATCTTCACCCTCAAATGCCGGCTGTGGCAGCCGCATTTGGTAGTGGCTATGGGAATCAGTACCCTTATCAGTTTTTTCATCATGGCCCTGGTGGTGATAGGTTGATGAGATTAGGCCCATCGGCGACAAGAGAGGCGAGGAAGAAGAGGATGGCAAGGCAGAGAAAGCTGTTATCTCATCACAGGCACAACAATCAAAACCAGAATCAACCCTTGGATCCACATGCAAGATTGGGAAGTGATAATTGCACCACTTTGTTAGCTCCTGCTCATGCAAATCAAGCCAATTGGGTGTATTGGCAGACTATGACTGGTGGGGCAGCTCCTATGGTACCAGTTGTTCCGGTTGAGCCGCCAGCGGTACAACAGGTGGTTGATCGGACCACCATGCAAACCCAGAATACACAGAATTATCATCAAGGCCGAGTCTCATCGGATAAGCGACAACAGGGTTGGAAACCTGAGAAGAACTTGAAGTTTCTTCTGCAAAAGGTGTTGAAGCAAAGTGATGTAGGAAGTTTGGGGAGAATTGTTTTGCCAAAAAAAGAAGCAGAAACCCATTTACCAGAACTTGAAGCAAGAGATGGAATTTCTATAACAATGGAAGATATTGGTACTTCAAGAGTTTGGAACATGCGCTATAGATACTGGCCAAACAACAAAAGCAGGATGTATTTGCTTGAGAACACTGGGGACTTTGTGAGAGCTAATGGACTCCAAGAGGGAGATTTCATAGTGATATATTCAGATGTGAAGTGTGGCAAATTTATGATAAGAGGAGTGAAAGTGAGGCAACAAGGGATGAAAGCAGAGACAAAGAAAGGAGGAAAAATGCATAAAAACCAACAACATGGGAATAATAATGCTGCAACTACAGCTGGTGCTGTTGCTGCTATTAATAATGGCTCTTCATCTTCACCTAAGCATAAAAATGAAAAGCTAGCAAGATAA 2451 0.4202 MRYMECRVELEGVDLHASGVVVNENNNIMNNHHHHLVVGFEETMAAAERDIWLNGNDDDDLLGVNDPSMFYADFPPLPDFPCMSSSSSSSSTPALPVKTTNCTTTTTRTTSSSSSSSAASWAVLRSDFEENLEQNNYNCCMQNEHQQQHDHNQHDVYDIGPAGLSSNASMEVSQQHHYLNHQQQNHDPCLDGTVGDCMDEVMDFGYMELFEGNEFFDPASIFQSEENPLVEFTQVQTVPQQEEHQHAMLTHHYQESTLLQHQGVTNEEDNDHHNQALMCAKTTNNNDVEIVQGEADATGAGVDDEMSSVFLEWLKSNKDSVSANDLRSVKLKKATIESAAKRLGGGKEAMKQLLKLILEWVQTSHLQNKRRKESNESDLLTQFQDPIQSQNRKNTSSNLHVAPDQSNTCFNQTPWVSVSQQNYGTATDQAPLMTVPQSFPQQMVGGYLGDPYTNGGTASNNHNPYQPSAEYQMLESAPTWPPSQFTTVANSQYNQSFGDSNLHPQMPAVAAAFGSGYGNQYPYQFFHHGPGGDRLMRLGPSATREARKKRMARQRKLLSHHRHNNQNQNQPLDPHARLGSDNCTTLLAPAHANQANWVYWQTMTGGAAPMVPVVPVEPPAVQQVVDRTTMQTQNTQNYHQGRVSSDKRQQGWKPEKNLKFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGISITMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKFMIRGVKVRQQGMKAETKKGGKMHKNQQHGNNNAATTAGAVAAINNGSSSSPKHKNEKLAR* 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g1086 816 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 46 808 IPR044800 GO:0003700
Lan13g1086 816 Pfam B3 DNA binding domain 663 759 IPR003340 GO:0003677
Lan13g1086 816 MobiDBLite consensus disorder prediction 769 816 - -
Lan13g1086 816 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 46 808 - -
Lan13g1086 816 MobiDBLite consensus disorder prediction 379 406 - -
Lan13g1086 816 MobiDBLite consensus disorder prediction 781 808 - -
Lan13g1086 816 CDD BfiI_C_EcoRII_N_B3 660 761 - -
Lan13g1086 816 Gene3D - 658 778 IPR015300 -
Lan13g1086 816 ProSiteProfiles B3 DNA-binding domain profile. 662 764 IPR003340 GO:0003677
Lan13g1086 816 MobiDBLite consensus disorder prediction 365 406 - -
Lan13g1086 816 SUPERFAMILY DNA-binding pseudobarrel domain 661 758 IPR015300 -
Lan13g1086 816 MobiDBLite consensus disorder prediction 85 116 - -
Lan13g1086 816 SMART B3_2 662 762 IPR003340 GO:0003677
Lan13g1086 816 MobiDBLite consensus disorder prediction 553 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g1086 Lan-Chr13 16193270 16198850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g1086 49 798 B3 DNA Binding Superfamily AT3G24650 43.846 6.10e-154 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lan13g1086 B3 3.8e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g1086 - - lang:109363285 1552.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g1297 7 17961877 17966725 Lan13g1086 13 16193270 16198850 LSH