Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g1085 ATGGGATATAATGAGAATGTAACCAAAGTTGGTGATAACCAAGGAGAAGATGCAACATCAAGATTTTTTCAATGTCAATTTTGTTCAAGAAAGTTTCATAGCTCTCAAGCTTTAGGGGGACACCAAAATGCTCACAAGAAAGAGAGAACAGTTGCAAGAAATGCTAAGAGGGCTTATGAGTACTCATATGTTCCCTTTGCTTCCCCATTCTCAACCCCTATGGTTTTCTCTCCAACCCTTCATATGGGTATTTTGAACCCTCCAATGTTCATTACTTCCCATGCAGAAAACCACTCTTATATTCCTCAAGAAATGGCAGCAAAATTTGGTTCAAATGGTGCACCTAGATTTGAGAATGCTGTGTTTCTTGAGGGTAGTTCAAGAAGTGAACTCAATGAGGAAGATGAGACTAGTTTCATTAATTGGCAAAGAAGCATAAGAAGCAACAACTTCAGTAATAGAAGTGACACATTTCAACATATATCATTGAAAAGTAACAATGAAAACATTGGAATTTGGAACAATGTTACAGAAGAAGGAAGAAAGCTTGACTTATCTCTTCATTTATAG 570 0.3667 MGYNENVTKVGDNQGEDATSRFFQCQFCSRKFHSSQALGGHQNAHKKERTVARNAKRAYEYSYVPFASPFSTPMVFSPTLHMGILNPPMFITSHAENHSYIPQEMAAKFGSNGAPRFENAVFLEGSSRSELNEEDETSFINWQRSIRSNNFSNRSDTFQHISLKSNNENIGIWNNVTEEGRKLDLSLHL* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g1085 189 SUPERFAMILY beta-beta-alpha zinc fingers 20 50 IPR036236 -
Lan13g1085 189 ProSiteProfiles Zinc finger C2H2 type domain profile. 23 50 IPR013087 -
Lan13g1085 189 PANTHER ZINC FINGER PROTEIN JAGGED 13 189 IPR045320 GO:0003700
Lan13g1085 189 PANTHER PROTEIN LATE FLOWERING 13 189 - -
Lan13g1085 189 ProSitePatterns Zinc finger C2H2 type domain signature. 25 45 IPR013087 -
Lan13g1085 189 Gene3D Classic Zinc Finger 4 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g1085 Lan-Chr13 16167763 16168500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g1085 5 78 C2H2 Transcription Factor Family AT5G25160 41.892 1.04e-13 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan13g1085 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g1085 - - gmx:100792059 206.453