Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g1076 ATGGCTGAAGATTCTGGTGAATGGGATGCTGACAAAATGCTTGACTTCTATATTCATGATTATCTTGTGAAAAATAATTTACATGCCTCAGCACAATCTTTTATGACTGAAGCAAACCTTCCTGTTCATAAACCAGCAATGAAGGATGCGCCGGATGGATTTCTTTATGAGTGGTGGTCTGTCTTTTGGGACTTATCCCTCACAAAGATGCAAAAACAATGCTCCGAGTCTGCCTCAGCTTACATCGAGGCTCAGATAGCGAAGGCGAGAGAACATCGACTTCAAATGCAACAATTGCTAGTAATGCAGAAGGACAGTGCACAGTTACAGCAAAGAGATAGTGATCATTCTGTACTAGGTGGTTCCTTAAATGCCATGAACTCTAAGGTAGTGATGGGGCCTCCCGAAGCAAGTGTGTCAGCGACGGAAATGTTCGAAGAACGAATGAAACAACTCAATTCAATGGGTTCAGAGGCATCTTTAACTCCTATGCATACCTATAAAATGGCCTTTCCCAAATCAGCAACAACTCATTACAGCCGTCTGATTGGTGATCACTCAAGACATGTTTCTAGTTCGCCGCAGCGAATTCAGACACCGACTTTGTGGACTGATGACATCGAACGAGAACTTAACTCGGGAGTCACTCCAATGGCTATGCCTATGGAGCCATCAGTTTTTGAACAAACAATGTTACAAGTAAACTCTGGGCTAAGCAATGCAGGTTTTTATCAAGGAAATACAAGTGTTCCAGTAATGGGCATGCCTCTCACTGCTCAGGCACAAATTAGCCGAAGTGCAGAGAATGTTCAGTCTGCCTGGACCCTAGTGCAGTCGACAGATGAATATGATCCAGACACAACATTCATTACCTCAACTGCAGGAGCAATTGCAGCAGGAAGACATGAGGGATATGAGAAGCATGACTATGCTGCTGCTGCTATTAGATTCAATGACAGAAAAAGACAACACCCTTCTTGTCCTGAAGCTGCCAATAGCACTATTGGTTGGAACAATGTGGGAAAAAGCATGATGATGGATGGTACATATGGAACAGGAGGAGTTGCATCATCTTCAAATTTGATGGAGAACATGGAACAGTATGAACAAGTTGGTGCTAAAGGCGATAACATCAGGTCCCTTCAGCCGGACGACGGAGGAGGAGATGATGGAAAAGACTATGGAACAATAAACCAAACTCTACCTAAGCAAAAGGAAGAGGCTTCAAAAGGTTTCACCTTTACTGAATTTAAATGCATAAGAATGACAAACAGCAAAGTTACTTGCTGTGACTTTTCTTCAGATGAAAAGTTTCTTGCCAGTGCTGGACATGACAAGAAGGTTGTCCTATGGAATATGGACACTTTGAAGACAGAAAGCACTCCAGAGGAACACAAATGGGTTATTTCAGATGTCCGCTTTAGACCGAATTCTACCGTGTTCGTGACATCCTGTATGGATAATTGTGTGCGGTTATGGGATGCAGCTAATCCAAGATATTGTCTGGAACAATATAATGTGCACAGTTCTGCTGTTATGTCAGTCGATTTCCACCCGAAGCAAACTGATATTCTCTGCGTCTCGGACAGTAAAAATGAAATTCAGTACTGGAACATTACTACATCCTCCTTCATCAATACCTTTAAGGGAGGTAATGCAATGGTGAGGTTTCAGCCTGGAGTAGGACAGGTACTAGCAGCAGCTTATGATAACGGAGTATCGATTTTCGATGCTGAAACCGGCACATACATTTACTCACTCCAGGGTCATCCTGAAGCAGTAAGCTACATTTGCTGGGATGCAAATGGAAATACCTTGGCATCTATGAGTCCTAATTTGGTGAAGATTTGGTCACTGGCCTCCGGAGAATGCGTTCGAGAGTACAGCAGCACCAGTGAGAATCAGTTTCATTCCTGTGCTTTTCATCCAAGAAATTCAACTATTTTGGTGATTGGAGGGAATTCACACTTAGAGCTGTGGAACATAGATAAGAACAGAACATTACCAATTCTTGCACACAAGGATATAATATCTTCTTTGGTTCATTCTTCTGTCACTGGAATTGTTGCATCTGCAAGCCATGATGGCTTTGTTAAGTTGTGGAAATAA 2109 0.4258 MAEDSGEWDADKMLDFYIHDYLVKNNLHASAQSFMTEANLPVHKPAMKDAPDGFLYEWWSVFWDLSLTKMQKQCSESASAYIEAQIAKAREHRLQMQQLLVMQKDSAQLQQRDSDHSVLGGSLNAMNSKVVMGPPEASVSATEMFEERMKQLNSMGSEASLTPMHTYKMAFPKSATTHYSRLIGDHSRHVSSSPQRIQTPTLWTDDIERELNSGVTPMAMPMEPSVFEQTMLQVNSGLSNAGFYQGNTSVPVMGMPLTAQAQISRSAENVQSAWTLVQSTDEYDPDTTFITSTAGAIAAGRHEGYEKHDYAAAAIRFNDRKRQHPSCPEAANSTIGWNNVGKSMMMDGTYGTGGVASSSNLMENMEQYEQVGAKGDNIRSLQPDDGGGDDGKDYGTINQTLPKQKEEASKGFTFTEFKCIRMTNSKVTCCDFSSDEKFLASAGHDKKVVLWNMDTLKTESTPEEHKWVISDVRFRPNSTVFVTSCMDNCVRLWDAANPRYCLEQYNVHSSAVMSVDFHPKQTDILCVSDSKNEIQYWNITTSSFINTFKGGNAMVRFQPGVGQVLAAAYDNGVSIFDAETGTYIYSLQGHPEAVSYICWDANGNTLASMSPNLVKIWSLASGECVREYSSTSENQFHSCAFHPRNSTILVIGGNSHLELWNIDKNRTLPILAHKDIISSLVHSSVTGIVASASHDGFVKLWK* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g1076 702 Pfam LisH 12 38 IPR006594 GO:0005515
Lan13g1076 702 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 670 702 - -
Lan13g1076 702 SUPERFAMILY WD40 repeat-like 410 702 IPR036322 GO:0005515
Lan13g1076 702 ProSiteProfiles Trp-Asp (WD) repeats profile. 462 494 IPR001680 GO:0005515
Lan13g1076 702 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 331 702 - -
Lan13g1076 702 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 7 267 - -
Lan13g1076 702 CDD WD40 424 702 - -
Lan13g1076 702 Gene3D - 557 702 IPR015943 GO:0005515
Lan13g1076 702 Gene3D - 388 556 IPR015943 GO:0005515
Lan13g1076 702 ProSiteProfiles Trp-Asp (WD) repeats profile. 420 461 IPR001680 GO:0005515
Lan13g1076 702 ProSitePatterns Trp-Asp (WD) repeats signature. 439 453 IPR019775 -
Lan13g1076 702 ProSiteProfiles LIS1 homology (LisH) motif profile. 10 42 IPR006594 GO:0005515
Lan13g1076 702 ProSiteProfiles Trp-Asp (WD) repeats profile. 505 547 IPR001680 GO:0005515
Lan13g1076 702 Pfam WD domain, G-beta repeat 681 702 IPR001680 GO:0005515
Lan13g1076 702 Pfam WD domain, G-beta repeat 461 494 IPR001680 GO:0005515
Lan13g1076 702 Pfam WD domain, G-beta repeat 424 452 IPR001680 GO:0005515
Lan13g1076 702 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 462 494 - -
Lan13g1076 702 ProSiteProfiles Trp-Asp (WD) repeats profile. 670 702 IPR001680 GO:0005515
Lan13g1076 702 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 420 455 - -
Lan13g1076 702 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 7 267 IPR044716 GO:0003714
Lan13g1076 702 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 331 702 IPR044716 GO:0003714
Lan13g1076 702 SMART WD40_4 663 702 IPR001680 GO:0005515
Lan13g1076 702 SMART WD40_4 580 618 IPR001680 GO:0005515
Lan13g1076 702 SMART WD40_4 413 452 IPR001680 GO:0005515
Lan13g1076 702 SMART WD40_4 541 577 IPR001680 GO:0005515
Lan13g1076 702 SMART WD40_4 498 538 IPR001680 GO:0005515
Lan13g1076 702 SMART WD40_4 455 494 IPR001680 GO:0005515
Lan13g1076 702 SMART WD40_4 621 661 IPR001680 GO:0005515
Lan13g1076 702 SMART Lish 10 42 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g1076 Lan-Chr13 16042299 16048732 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g1076 500 701 Miscellaneous Gene Families AT5G08390 23.671 3.18e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lan13g1076 WD40 0.057 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g1076 - - lang:109363640 1430.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g1274 7 17652431 17671672 Lan13g1076 13 16042299 16048732 LSH