Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g1055 ATGAACAACAACAACAACATCAACAATAATAATAACCACTTGGTGAAACCAATGATGGGGTTGAATTCTTCAACTGTGGCTGAGTTTTTAGCTGATCCTGGCTTTGCTGAGAGGGCTGCAAAGTTTTCTTGCTTTGGAAGTAGAAGTTTCAATGATAGGACAACACAATTGGGGTTGAAGAACAATGATGAATTGGCTCAAAGATCTAGTCTTTTGATGGAAAATGGGAAACTTTCTAGAGTTTCAAGCACCCCATCACTCAAAGTTCTTGGAATTGGATCTCAAATGGGTATTCAAGATAATAAGAATTCTTCAATGGAAGTTGCCACTTCTCAAGAGGAATCTACAATCTCTGAACAAACTATGAATGGGGACAATGGATTCATCAAACCTTGCTCTTATGTCAATTCCAGGAAAAGAAAGGGTTCTTCCAAAGGAAAAGCCAAAGAAAGTTCAACACTTATCAATCATGCCATGGGTCTTTCACTTCATGGTGGTGAAGCTAGTGAAGACTCAAATGTGAAACGTTACAAAGCAAATAATGGAAATGAAAATGGAACTTTGAAGGAAGAGAAAGAATCCAAAGAGGGTGCTAGTATTGGAGTTGATGAGAAACAGAACAAGAGTAACTCAAAACCTCCTGAACCACCAAAGGATTATATTCATGTTAGAGCAAGAAGAGGTCAAGCTACCGATAGCCATAGTCTTGCAGAACGAGTAAGGAGGGAGAAAATCAGTGAAAGGATGAAGCTTCTCCAAGATCTTGTACCAGGTTGCAATAAGGTCACTGGAAAAGCACTTATGCTAGATGAAATTATAAACTATGTTCAATCATTACAACGCCAAGTTGAGTTCCTTTCTATGAAATTGGCTACTGTTAACACCAGGCTGGATTTTAATATTGAGAGTCTAATCTCAAAAGATGTATATCAATCAAATGATTCTTTCCCACTAGATTCCTCAGCAGAAAGCTTTTATGGGCAACAACAGCCACAAAACTCAGCAATCTACAATAACATTCCTAATGGAACATTGTCCCATAGTTCAGTGGACCCATTAGATACTACTACTCTGTGCCAAAACATTGCTATGCATTTACCTTCCCTTAATGGATTTAGTGAAGGTGCCTCTCAGTGTCCAATAGCATTCTCTGAGGAAGACCTTCAAACTATTGTTCAAATGGGTTTTGGCCAAACTTCAAATAGGAAATCACCACAATCCCAGAGTTTTAATGGCTCAAATCAAATACATCTATGA 1257 0.3819 MNNNNNINNNNNHLVKPMMGLNSSTVAEFLADPGFAERAAKFSCFGSRSFNDRTTQLGLKNNDELAQRSSLLMENGKLSRVSSTPSLKVLGIGSQMGIQDNKNSSMEVATSQEESTISEQTMNGDNGFIKPCSYVNSRKRKGSSKGKAKESSTLINHAMGLSLHGGEASEDSNVKRYKANNGNENGTLKEEKESKEGASIGVDEKQNKSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLATVNTRLDFNIESLISKDVYQSNDSFPLDSSAESFYGQQQPQNSAIYNNIPNGTLSHSSVDPLDTTTLCQNIAMHLPSLNGFSEGASQCPIAFSEEDLQTIVQMGFGQTSNRKSPQSQSFNGSNQIHL* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g1055 418 Coils Coil 276 296 - -
Lan13g1055 418 CDD bHLH_AtBPE_like 219 304 - -
Lan13g1055 418 Pfam Helix-loop-helix DNA-binding domain 233 280 IPR011598 GO:0046983
Lan13g1055 418 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 229 279 IPR011598 GO:0046983
Lan13g1055 418 SMART finulus 235 285 IPR011598 GO:0046983
Lan13g1055 418 MobiDBLite consensus disorder prediction 117 220 - -
Lan13g1055 418 Gene3D - 226 301 IPR036638 GO:0046983
Lan13g1055 418 MobiDBLite consensus disorder prediction 397 418 - -
Lan13g1055 418 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 16 415 IPR024097 GO:0006355
Lan13g1055 418 MobiDBLite consensus disorder prediction 185 220 - -
Lan13g1055 418 PANTHER BHLH TRANSCRIPTION FACTOR 16 415 - -
Lan13g1055 418 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 227 298 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g1055 Lan-Chr13 15716587 15720043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g1055 18 379 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G48560 48.177 1.44e-87 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan13g1055 HLH 3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g1055 - - gmx:100812081 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1817 11 34815592 34822442 Lan13g1055 13 15716587 15720043 LSH
Lan13g1055 13 15716587 15720043 Lan12g0043 12 380948 383808 PCT
Lan12g0043 12 380948 383808 Lan13g1055 13 15716587 15720043 PCT