Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g1052 ATGGCTAAACCTGGGGTGTTAGATTCTGATCCAGTGATGATAGTGAAGAAGAGCATAGAGTTGAAGAAGAAGGAGTTGAAGAGGTTGGTGAAGTCCATTCTTGATGATGATGATTTCAGTATTGAAATAATTGATCAAGCTAAGGAAGCACTTTGTGTTATAAAGGATTTGAAGATGAGAAAGAGTTCTTCATCTTCTTCATCTTCATCATCACTTTCTTTGAAGCTGCACAAGAATGTTACTTGCCCAGATGAATTCAAGTGTCCACTCTCCAAGGAATTGATGAGAGATCCTGTGATTGTAGCTTCTGGTCAGACATATGATAGGCCTTTCATTCAAAAATGGTTGAGTGCTGGAAATAGGACTTGTCCTTCAACACAACATGTTCTCTCACACACTGTCCTCACTCCAAATCACCTAATAAGGCAAATGATAGAACAATGGTCTAAAAAACAAGGGATTGAATTGTCCAAAAGTTTTAGCTATATTAACGAGGATGGCGTAACAGAAGCCGATCGCGACCATTTTCTTTGTTTGCTTAAAAAAATGTCTTCAGGGCTTTCTGATCAGAAGGCAGCTGCGAAAGAACTCCGGTTGTTGACGAAGAAACATCCTTGCTTTCGACTACTTTTTTGTGATTCTGTAGACGCAATTCCCCAACTGCTTAAGCCAATTTGCGGGCACGGGAGCGATTCTTTTAGTAGTATTCACCCTGATCTCCAAGAAGATGTAATCACAATACTCCTCAATATCTCAATTCATGACAACAACAAGAAGCTAGTAGCTGAAACTCCAATGGTAATTCCAATCCTTATGAAAGCACTGAGATCAGGAACAACTGAAACAAGAAGCAACGCTGCCGCAGCCCTTTTCACTTTGTCGGCTCTTGACTCGAACAAGGAACTTATAGGGAAATCCGGTGCCTTGAAGCCATTGATCGACCTTTTAGAAGAAGGGCACCCCTTAGCCATGAAGGATGTTGCTTCCGCAATTTTTACTCTCTGTGTCATGCAAGAGAACAAGTCGAGAGCAGTAAAGGACGGCGCAGTGAGGGTGATCGTGAGGAAGATCAAGGACCGACTTCATATCGATGAATTACTAGCTATCCTTGCGCTGCTTTCAAGTCATCGTCGGGCTATTCAAGACATAGGAGAGCTCGGAGCTGTTCCTAGCTTGCTAAGCATTATCAGAGAAAGCTCCTGCGAACGAAACAAGGAGAATTGCGTCGCAATCCTTCAAACTCTTTGTCTGTATGATAGGTCCAAGTTAAAGGATATAAAAGAAGAAGAGAACAATCACAGAACAATCTCTGAGCTTGCACAGAATGGAACATCAAGGGCTAAGAGAAAAGCTAGTGGAATTCTTGAGAGACTTAACAGGGTTGTTAATTTCACACACACTGCATAA 1407 0.4179 MAKPGVLDSDPVMIVKKSIELKKKELKRLVKSILDDDDFSIEIIDQAKEALCVIKDLKMRKSSSSSSSSSSLSLKLHKNVTCPDEFKCPLSKELMRDPVIVASGQTYDRPFIQKWLSAGNRTCPSTQHVLSHTVLTPNHLIRQMIEQWSKKQGIELSKSFSYINEDGVTEADRDHFLCLLKKMSSGLSDQKAAAKELRLLTKKHPCFRLLFCDSVDAIPQLLKPICGHGSDSFSSIHPDLQEDVITILLNISIHDNNKKLVAETPMVIPILMKALRSGTTETRSNAAAALFTLSALDSNKELIGKSGALKPLIDLLEEGHPLAMKDVASAIFTLCVMQENKSRAVKDGAVRVIVRKIKDRLHIDELLAILALLSSHRRAIQDIGELGAVPSLLSIIRESSCERNKENCVAILQTLCLYDRSKLKDIKEEENNHRTISELAQNGTSRAKRKASGILERLNRVVNFTHTA* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g1052 468 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 155 IPR013083 -
Lan13g1052 468 CDD RING-Ubox_PUB 86 127 IPR045210 -
Lan13g1052 468 SUPERFAMILY ARM repeat 184 458 IPR016024 -
Lan13g1052 468 SUPERFAMILY RING/U-box 80 155 - -
Lan13g1052 468 ProSiteProfiles U-box domain profile. 81 155 IPR003613 GO:0004842|GO:0016567
Lan13g1052 468 SMART arm_5 296 336 IPR000225 GO:0005515
Lan13g1052 468 SMART arm_5 254 295 IPR000225 GO:0005515
Lan13g1052 468 SMART arm_5 376 417 IPR000225 GO:0005515
Lan13g1052 468 SMART arm_5 202 253 IPR000225 GO:0005515
Lan13g1052 468 Pfam U-box domain 83 152 IPR003613 GO:0004842|GO:0016567
Lan13g1052 468 PANTHER U BOX DOMAIN-CONTAINING 5 466 - -
Lan13g1052 468 Coils Coil 16 36 - -
Lan13g1052 468 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 5 466 - -
Lan13g1052 468 SMART Ubox_2 85 148 IPR003613 GO:0004842|GO:0016567
Lan13g1052 468 Gene3D - 166 461 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g1052 Lan-Chr13 15654968 15658392 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g1052 144 468 U-box Gene Family AT3G07360 61.747 6.79e-133 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g1052 - - lang:109360713 798.505
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1819 11 34842144 34845292 Lan13g1052 13 15654968 15658392 LSH