Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g1049 ATGGAGGCCATTGGTTCTGTGGATGAACTCTTGGATTTCTCATTAGACGTAGGTGAGGTAGATGATGACGACGACAAAAACAGGAAAGCCTTTCCTAAACTTGACCTGAAATGCAGTGATCCACCATCCTTAAGCCCATTGGACCTGGGTGATCCTAGCCCTCCATTTTCTGAGTTTGCAGAAGAAGAGCTTGAATGGCTATCCAACAAAGATGCGTTTCCTGAGGTTGAAACATTTGTTGACTTACCCTCTATTCAACCCAACTTATCAAAGCACGAGACAGGTTCAATGCTTGAATACAGCACAAGCAGTAGCAACAGTAATAACAGCCCTAACAGCATTAGCCTCTTAAGCGGGTATGATAACCTGAACGTCCCTGTCCGTCCACGGAGTAAGTCTCGCAGTCGCAGCAGGCATCTCGCTAGCAATTCTGGCATATCCTCCCAGCAATCTTGGTGGAGACAACCAATTAATGAAAGTGCCAAACTAGAAGTGATAACAATGTCAACCATTGGGAGGAAATGTCAGCACTGTGGAGCTGAAAAAACTCCGCAATGGCGTGCAGGCCCCCTTGGGCCAAAAACTCTTTGTAATGCATGCGGGGTTAGATATAAGTCCGGGCGTCTTGTGCCTGAGTACCGCCCTGCAAGTAGCCCATCTTTTCGCAGCGACTTGCATTCAAATTCTCATAGGAAGGTAATGGAGATGAGGAAGCAGAAGCAAATTGGAATGACTTGA 738 0.4661 MEAIGSVDELLDFSLDVGEVDDDDDKNRKAFPKLDLKCSDPPSLSPLDLGDPSPPFSEFAEEELEWLSNKDAFPEVETFVDLPSIQPNLSKHETGSMLEYSTSSSNSNNSPNSISLLSGYDNLNVPVRPRSKSRSRSRHLASNSGISSQQSWWRQPINESAKLEVITMSTIGRKCQHCGAEKTPQWRAGPLGPKTLCNACGVRYKSGRLVPEYRPASSPSFRSDLHSNSHRKVMEMRKQKQIGMT* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g1049 245 MobiDBLite consensus disorder prediction 21 35 - -
Lan13g1049 245 ProSitePatterns GATA-type zinc finger domain. 175 200 IPR000679 GO:0006355|GO:0043565
Lan13g1049 245 SMART GATA_3 169 219 IPR000679 GO:0006355|GO:0043565
Lan13g1049 245 CDD ZnF_GATA 174 222 IPR000679 GO:0006355|GO:0043565
Lan13g1049 245 Gene3D - 170 241 IPR013088 GO:0006355|GO:0008270
Lan13g1049 245 PANTHER GATA TRANSCRIPTION FACTOR 1 7 241 - -
Lan13g1049 245 Pfam GATA zinc finger 175 208 IPR000679 GO:0006355|GO:0043565
Lan13g1049 245 ProSiteProfiles GATA-type zinc finger domain profile. 169 205 IPR000679 GO:0006355|GO:0043565
Lan13g1049 245 MobiDBLite consensus disorder prediction 97 120 - -
Lan13g1049 245 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 171 233 - -
Lan13g1049 245 PANTHER GATA TRANSCRIPTION FACTOR 7 241 - -
Lan13g1049 245 MobiDBLite consensus disorder prediction 14 55 - -
Lan13g1049 245 MobiDBLite consensus disorder prediction 97 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g1049 Lan-Chr13 15512909 15518049 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g1049 171 243 C2C2-Gata Transcription Factor Family AT3G24050 84.932 1.10e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lan13g1049 GATA 8.8e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g1049 - - gmx:100784527 279.256