Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g1033 ATGTCTGAAGTTGTCAATGCTGGTGGCGGCGGTGGTGGCGGTGGTGGCGGTGGTGAAATCCCTCAGAACATGACCATCTACATCAACAACCTTAATGAAAAGATTAAGATTGAAGAGTTGAAGAAATCTTTGCGCGCTGTTTTTTCTCAGTTTGGGAAGATATTAGAAGTGTTAGCTTTCAAGACTCTGAAGCATAAAGGTCAAGCTTGGGTTGTGTTTGAGGATACATCTTCTGCTTCCAATGCCCTTAGGCAAATGCAAGGCTTCCCTTTCTATGATAAGCCCATGAGAATACAGTATGCAAAGACTAAGTCAGACGTAATAGCAAAGGCTGATGGTTCTTTTGTTCCGAGGGAAAGACGTAAGAGGCATGATGACAAAGGCAAAAAACGGAAGGACCAGCATGATGCTAATTTAGCTGGACTGGGCATAAATCCAGCTTATGCTGGTGCATATGGTGCAACACCTGCTCTATCCCAGATACCTTATCCAGGCGGTGCAAAATCATTGGTACCTGAGGCTCCGGCGCCACCAAATAACATCCTCTTTATCCAGAATCTTCCCAACGAGACGACGCCGATGATGTTGCAAATGCTCTTTCTTCAATATCCCGGTTTCAAGGAAGTTAGAATGGTGGAAACAAAGCCAGGAATTGCCTTTGTGGAGTATGGGGATGAGATGCAATCCACAGTAGCAATGCAGGCTCTACAAAGTTTCAAGATAACCCCACAGAACCCTATGTTGATAACTTATGCCAAGAAATAG 765 0.4458 MSEVVNAGGGGGGGGGGGEIPQNMTIYINNLNEKIKIEELKKSLRAVFSQFGKILEVLAFKTLKHKGQAWVVFEDTSSASNALRQMQGFPFYDKPMRIQYAKTKSDVIAKADGSFVPRERRKRHDDKGKKRKDQHDANLAGLGINPAYAGAYGATPALSQIPYPGGAKSLVPEAPAPPNNILFIQNLPNETTPMMLQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQALQSFKITPQNPMLITYAKK* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g1033 254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 103 IPR000504 GO:0003723
Lan13g1033 254 Gene3D - 169 254 IPR012677 -
Lan13g1033 254 Gene3D - 18 122 IPR012677 -
Lan13g1033 254 SUPERFAMILY RNA-binding domain, RBD 22 242 IPR035979 GO:0003676
Lan13g1033 254 MobiDBLite consensus disorder prediction 113 136 - -
Lan13g1033 254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 180 254 IPR000504 GO:0003723
Lan13g1033 254 CDD RRM1_U1A_like 25 102 - -
Lan13g1033 254 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 96 IPR000504 GO:0003723
Lan13g1033 254 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 182 241 IPR000504 GO:0003723
Lan13g1033 254 SMART rrm1_1 181 250 IPR000504 GO:0003723
Lan13g1033 254 SMART rrm1_1 25 99 IPR000504 GO:0003723
Lan13g1033 254 CDD RRM2_U1A_like 178 250 - -
Lan13g1033 254 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A 15 254 - -
Lan13g1033 254 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 15 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g1033 Lan-Chr13 15097707 15102628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g1033 13 115 Eukaryotic Initiation Factors Gene Family AT2G23350 29.524 9.91e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g1033 K11091 - gmx:100500002 399.823