Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g1015 ATGGGAAATGATGCTCATTGCACCATTTCCACCACCATCACAACATCTTCTTCTTCCTCCTCTTCTTCATCAACAACATCTTCTATCTCAAACACAAAATCACACACTTATCAAAACTCCAAAAAGGGTCCTTCAAAAGACTCACAAAATGGAACCAAGGAATGCAAGAAGAGAAAGAGGATGAGTGAGAATGAATCAAAGAACCCTACTTATAGAGGTGTAAGAATGAGAAGTTGGGGCAAATGGGTATGTGAAATCCGTGAGCCAAGAAAGAAATCAAGAATATGGTTAGGGACATACCCTACACCAGAAATGGCAGCTAGGGCACATGATGTTGCTGCTTTAGCTATCAAAGGTGATTCAGCTTTTCTCAACTTCCCTAAACTTGCACAATATTTTCCAACACCAGAAACCACATGCCCTAAGGATATTCAAGCTGCAGCTGCAAAAGCAGCATCAACCACTATTTTTGAAGATGATACTAAGTATTGTGAAGCTGATGCTGAAACTGAACAAGACCTATTAGTAGAACCTTCATGTTTAACTATTTCCAATGACAATTCTTTAGATGATGATGATGATGATACATTGTTTGACCTACCAGATCTTTTCCCTGATGTAAACAATGGAGTTTTCTCTTATTCTTCTTCTTCTTCTTGGCATTTATGTACAGTTGATAGTGGGTTAAGGCTAGAGGAGCAGTTTTTGTGGGATAACTATTAA 723 0.3845 MGNDAHCTISTTITTSSSSSSSSSTTSSISNTKSHTYQNSKKGPSKDSQNGTKECKKRKRMSENESKNPTYRGVRMRSWGKWVCEIREPRKKSRIWLGTYPTPEMAARAHDVAALAIKGDSAFLNFPKLAQYFPTPETTCPKDIQAAAAKAASTTIFEDDTKYCEADAETEQDLLVEPSCLTISNDNSLDDDDDDTLFDLPDLFPDVNNGVFSYSSSSSWHLCTVDSGLRLEEQFLWDNY* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g1015 240 MobiDBLite consensus disorder prediction 1 72 - -
Lan13g1015 240 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700|GO:0006355
Lan13g1015 240 PRINTS Ethylene responsive element binding protein signature 93 109 IPR001471 GO:0003700|GO:0006355
Lan13g1015 240 Gene3D AP2/ERF domain 70 128 IPR036955 GO:0003700|GO:0006355
Lan13g1015 240 ProSiteProfiles AP2/ERF domain profile. 70 127 IPR001471 GO:0003700|GO:0006355
Lan13g1015 240 MobiDBLite consensus disorder prediction 1 46 - -
Lan13g1015 240 SMART rav1_2 70 133 IPR001471 GO:0003700|GO:0006355
Lan13g1015 240 CDD AP2 71 127 IPR001471 GO:0003700|GO:0006355
Lan13g1015 240 MobiDBLite consensus disorder prediction 47 66 - -
Lan13g1015 240 PANTHER ETHYLENE RESPONSE FACTOR 8 240 - -
Lan13g1015 240 Pfam AP2 domain 69 119 IPR001471 GO:0003700|GO:0006355
Lan13g1015 240 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 240 - -
Lan13g1015 240 SUPERFAMILY DNA-binding domain 70 127 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g1015 Lan-Chr13 14864356 14865241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g1015 58 236 AP2-EREBP Transcription Factor Family AT2G44940 49.048 4.25e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan13g1015 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g1015 - - gmx:100792964 235.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1877 11 35453802 35455093 Lan13g1015 13 14864356 14865241 LSH