Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g1013 ATGTCTCGCTTCTCTAGGTCCTCCGCGCCGCGCCTCCTCTACTACACCATCCGCTCCTCCACCACCACCACCGCCGCCGCCTCTCCTTCTTCTCCATCCTCCTCCCTTCTCGCTGCCACCTTCCACCTCCGCCACTTCTCCGCCGGCGGAAACCTCGCGCGCGCCAACGATTCGAAAGAGCCATGGTGGAAGGACTCCGTGGAGCGTTTGCGCAACATAGGGATCTCAGCGCATATAGATTCCGGCAAGACGACGCTGACGGAGCGGGTTTTGTACTATACGGGTCGGATCCATGAGATCCATGAGGTGAGGGGAAGAGATGGCGTTGGCGCGAAGATGGATTCGATGGATTTGGAGAGGGAGAAAGGGATTACTATACAATCAGCTGCTACTTACTGTACTTGGAAAGATTATAAGATTAACATAATTGATACACCTGGTCACGTTGATTTCACTATTGAGGTTGAGAGGGCTCTGCGTGTCCTTGATGGTGCTGTTCTTGTTCTTTGTAGTGTTGGTGGGGTGCAAAGTCAGTCTATTACTGTTGATCGGCAAATGAGAAGATATGAAGTTCCAAGACTTGCATTTATCAACAAGCTTGATCGGATGGGAGCAGATCCATGGAAAGTTTTAAATCAGGCAAGATCTAAGCTTCGACATCATAGTGCTGCAATGCAAGTTCCAATTGGCTTGGAAGATGATTTTAAGGGACTTGTTGATCTTGTGCATTTAAAGGCCTACTACTTTCATGGTCCAATGGGTGAAAATATTGTCACTGAAGAAGTTCCTGCAGACATGGAAGCTTTAGTGTCAGAAAAAAGACGTGAACTCATAGAAACTGTGTCAGAGATTGACGATAAACTTGCTGAAGCTTTTCTTAATGATGAGCCCATATCAGCTGCTGATCTTGAGGAAGCAGTTCGTAGGGCCACCATATCACAGAAATTCATACCAGTATTCATGGGTAGTGCTTTCAAAAATAAGGGGGTACAGACACTTCTGGATGGTGTACTTAGTTATTTGCCGTGTCCCATTGAAGTTAATAATTATGCCCTTGATCAAGCGAAGAATGAGGAGAAGGTTGTGTTGCCTGGAAGTCCAGATGGGCCACTTGTGGCATTGGCTTTCAAGTTGGAGGAAGGGCGGTTCGGTCAGTTAACATATCTAAGAATCTATGAGGGTGTCATTCGGAAGGGTGATTTTATTATTAATGTTAACACTGGCAAGAAGATCAAGGTTCCTCGTTTGGTTCGACTGCATTCTAATGAGATGGAGGACATTCAAGAGGCTCATGCTGGGCAAATAGTTGCTGTATTTGGTGTCGATTGTGCATCAGGAGATACTTTTACTGATGGGTCTGTTAGGTACACAATGACTTCTATGAACGTTCCTGAGCCAGTTATGTCATTAGCTGTACAGCCAGTCTCAAAAGATTCTGGAGGACAATTTTCAAAGGCTTTGAATCGCTTCCAAAGAGAGGATCCTACTTTCCGAGTTGGTTTGGACCCAGAGAGCGGGCAGACAATCATTTCTGGAATGGGGGAACTGCATTTAGATATCTATGTTGAACGCATTAAGAGAGAGTACAAGGTTGATGCTTCAGTTGGAAAGCCTCGTGTAAACTTCAGAGAAACTGTTACCCAGCGTGCTGATTTTGATTATTTACATAAGAAGCAAAGTGGAGGGCAAGGTCAATATGGTCGGGTAATTGGATACATTGAACCACTTCCTGCAGGATCACAAACTAAGTTTGAATTCGAAAACCTGCTTGTTGGGCAAGCTATTCCATCAAATTTTATCCCAGCAATTGAGAAGGGTTTCAAAGAAGCTGCCAACTCGGGTTCCTTAATTGGTCATCCAGTTGAAAATCTCCGAGTTGTCTTGATAGATGGTGCTGCCCACGCTGTTGATTCCAGTGAACTTGCATTTAAGATGGCTTCTATCTATGCTTTTAGACAGTGCTACACAGCTGCCAGACCAGTTATTTTAGAACCTGTTATGCTTGTTGAGCTAAAAGTACCAACAGAATTTCAAGGAGCAGTTGCTGGTGACATCAACAAGAGAAAAGGTATTATTGTTGGAAATGACCAGGAAGGAGACGATTCTATCATTACTGCCCATGTCCCTCTTAACAATATGTTTGGGTACTCTACAGCTCTTCGTTCAATGACACAGGGTAAAGGTGAATTCACTATGGAATACAAGGAGCATTCACCAGTTTCTCATGATGTACAGACACAATTGGTAAACACATACAAGGGGAACAAAGCTGCTGAATAA 2280 0.4461 MSRFSRSSAPRLLYYTIRSSTTTTAAASPSSPSSSLLAATFHLRHFSAGGNLARANDSKEPWWKDSVERLRNIGISAHIDSGKTTLTERVLYYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATYCTWKDYKINIIDTPGHVDFTIEVERALRVLDGAVLVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLNQARSKLRHHSAAMQVPIGLEDDFKGLVDLVHLKAYYFHGPMGENIVTEEVPADMEALVSEKRRELIETVSEIDDKLAEAFLNDEPISAADLEEAVRRATISQKFIPVFMGSAFKNKGVQTLLDGVLSYLPCPIEVNNYALDQAKNEEKVVLPGSPDGPLVALAFKLEEGRFGQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRLHSNEMEDIQEAHAGQIVAVFGVDCASGDTFTDGSVRYTMTSMNVPEPVMSLAVQPVSKDSGGQFSKALNRFQREDPTFRVGLDPESGQTIISGMGELHLDIYVERIKREYKVDASVGKPRVNFRETVTQRADFDYLHKKQSGGQGQYGRVIGYIEPLPAGSQTKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVENLRVVLIDGAAHAVDSSELAFKMASIYAFRQCYTAARPVILEPVMLVELKVPTEFQGAVAGDINKRKGIIVGNDQEGDDSIITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHSPVSHDVQTQLVNTYKGNKAAE* 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g1013 759 Hamap Elongation factor G [fusA]. 66 752 IPR004540 GO:0003746|GO:0005525|GO:0006414
Lan13g1013 759 SMART EFG_C_a 661 748 IPR000640 -
Lan13g1013 759 SUPERFAMILY Ribosomal protein S5 domain 2-like 538 660 IPR020568 -
Lan13g1013 759 SUPERFAMILY EF-G C-terminal domain-like 664 752 IPR035647 -
Lan13g1013 759 Pfam Elongation factor G C-terminus 662 747 IPR000640 -
Lan13g1013 759 Pfam Elongation factor Tu GTP binding domain 69 342 IPR000795 GO:0003924|GO:0005525
Lan13g1013 759 CDD mtEFG1_II_like 371 451 - -
Lan13g1013 759 Gene3D Translation factors 352 469 - -
Lan13g1013 759 CDD EFG_mtEFG1_IV 542 659 IPR005517 GO:0005525
Lan13g1013 759 Pfam Elongation factor G, domain IV 538 658 IPR005517 GO:0005525
Lan13g1013 759 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 68 345 IPR000795 GO:0003924|GO:0005525
Lan13g1013 759 CDD EF-G 72 344 - -
Lan13g1013 759 PANTHER ELONGATION FACTOR G, MITOCHONDRIAL 1 759 IPR045044 -
Lan13g1013 759 TIGRFAM EF-G: translation elongation factor G 66 753 IPR004540 GO:0003746|GO:0005525|GO:0006414
Lan13g1013 759 PRINTS GTP-binding elongation factor signature 72 85 IPR000795 GO:0003924|GO:0005525
Lan13g1013 759 PRINTS GTP-binding elongation factor signature 121 129 IPR000795 GO:0003924|GO:0005525
Lan13g1013 759 PRINTS GTP-binding elongation factor signature 141 151 IPR000795 GO:0003924|GO:0005525
Lan13g1013 759 PRINTS GTP-binding elongation factor signature 157 168 IPR000795 GO:0003924|GO:0005525
Lan13g1013 759 PRINTS GTP-binding elongation factor signature 193 202 IPR000795 GO:0003924|GO:0005525
Lan13g1013 759 PANTHER ELONGATION FACTOR G, MITOCHONDRIAL 1 759 - -
Lan13g1013 759 Gene3D - 665 735 - -
Lan13g1013 759 Pfam Elongation Factor G, domain III 463 537 IPR041095 -
Lan13g1013 759 SMART EFG_IV_2 539 659 IPR005517 GO:0005525
Lan13g1013 759 CDD mtEFG1_C 664 741 IPR035649 -
Lan13g1013 759 Pfam Elongation factor Tu domain 2 384 450 IPR004161 GO:0005525
Lan13g1013 759 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 114 129 IPR031157 -
Lan13g1013 759 CDD EFG_III 464 539 IPR009022 -
Lan13g1013 759 TIGRFAM small_GTP: small GTP-binding protein domain 70 241 IPR005225 GO:0005525
Lan13g1013 759 SUPERFAMILY Translation proteins 309 461 IPR009000 -
Lan13g1013 759 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 342 IPR027417 -
Lan13g1013 759 SUPERFAMILY EF-G C-terminal domain-like 461 538 IPR035647 -
Lan13g1013 759 Gene3D - 57 347 IPR027417 -
Lan13g1013 759 Gene3D - 544 748 IPR014721 -
Lan13g1013 759 Gene3D Elongation Factor G (Translational Gtpase), domain 3 470 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g1013 Lan-Chr13 14826367 14851453 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g1013 386 546 Eukaryotic Initiation Factors Gene Family AT3G22980 26.404 4.36e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g1013 K02355 - gmx:100783315 1379.39