Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g1002 ATGGATTCTTCCAACTCCCAACAACAACAACAACATCATCATCATGAGTATGACCCATCTCAAATGCAAGCATATGATCCATCATCACAACAATATTATCATCATCATCATCATGACTATAATAATAACAATAATAATAATAATCAGCAACAAAACCAATACTACCAAGACCAAATCTTGGTCCACCCTCCCGGTGTCGCAATCGCCCCTGAACCGGATCATTCTGCTGGATCCTCACAGACCCAGCAGCTGAACCCGGTTCAGGGTGCGTCAGATGCCGGGTTGTTGAACCCAGGAGTAGTAGTGGGAAATTTGACACAGCTTTCTCAATATGCAGGGAATGTAGATGGGGTGTTGCCAGTGATGTATGAACAGATTGGGCCTTCTCAATACAGAGGTAGAGGTCATAGGGGTGGTAGAAGGGGTGGCCGTGGCCATTTCAACCACCGAGGTCGAGCTCCTTACCGTGGGGGACGTGGCCGGGTTGTTGGTGATGGTAGACACTTTCCATCTAATGTAGCAGAGGCACCTGCTGCTGAAGGCACTTCGGTTGTGCAACCTGAATCATTAATCTCTGGACAAGTTTCATTACCTGATCCAACACAAGCACCGACCGCAAAGCTGCAGCTGCCACCGGCTAAGCTGTGGTGTGAAATTTGTAAGGCTGAGTGCAATAGTCCAGAAATGCTGCAGCAGCATATAAATGGAAAGCGACATAAGAAGAATTTTCTAGTGCATGAAGAATTACAAAGACGCAAAGCTGTTAATGGACAACTGAGCGGACAGATTTCTACTTCTGAATTGAATTTAACAATTCAGCCCGAGAGTGTTCAGGAATCTAAGACAGACAATCCCAAGGATGAAACTGAGCTGCAGAATATCGTCGGAGGGACTTCCGAAGTTCTAGCTGAAGCACCTGTGGGGGAACCCGATAACAACTCTGCTGGACGCGGACGTGGTGGCTTAAAGAATAAGAGACGAGGTAGAGGAAGTAAATACATGAGGAGTAATGATGGTTCAAGAATAGCAGTGGAACCGAAGCAGGCAATATCTTTTATATGTGAGTTGTGTAATGTTAAGTGTGAATCCCAGGTTGTCTATAACAGTCATATGATCGGGAAAAAGCACATGTCAAATTTCAAGCGTGTCCATGGCCACCAAGCTGTTAATTTAGAAGCTGCGGCGCAACATAACCCACCCAATGCAAATGATCTGTCAAATTCAAATAATTCTCTAGTCCATCAAGGTGTTAGTGATCCACAGCTCCTTTTGGCTCAGCTCTTGATGACTGTACAATCTGTACTATCGCAAGTCCAAGTACCGGCAGTAGCGCTACCATCAGGCCCCGTGGCCGGTCAGATACAAACAGTGGCTGGATCAAGTCATGATCACCTTCAGAATTTGTCACAGACACAAGTCTCGGGATCCACGGCTCATGTTGACAGTGAAAATCTAAATGGTGTCGGCGAAACAAAAATTCAGCCATTATCTGCCCCACCGGAGTTGAATGCCACCATCGCTGGTCTAAGTAATGACACCCAAACTACAGATGGAAGATCTGAAACTGAAAAAAAGGTGCTCTGA 1584 0.4577 MDSSNSQQQQQHHHHEYDPSQMQAYDPSSQQYYHHHHHDYNNNNNNNNQQQNQYYQDQILVHPPGVAIAPEPDHSAGSSQTQQLNPVQGASDAGLLNPGVVVGNLTQLSQYAGNVDGVLPVMYEQIGPSQYRGRGHRGGRRGGRGHFNHRGRAPYRGGRGRVVGDGRHFPSNVAEAPAAEGTSVVQPESLISGQVSLPDPTQAPTAKLQLPPAKLWCEICKAECNSPEMLQQHINGKRHKKNFLVHEELQRRKAVNGQLSGQISTSELNLTIQPESVQESKTDNPKDETELQNIVGGTSEVLAEAPVGEPDNNSAGRGRGGLKNKRRGRGSKYMRSNDGSRIAVEPKQAISFICELCNVKCESQVVYNSHMIGKKHMSNFKRVHGHQAVNLEAAAQHNPPNANDLSNSNNSLVHQGVSDPQLLLAQLLMTVQSVLSQVQVPAVALPSGPVAGQIQTVAGSSHDHLQNLSQTQVSGSTAHVDSENLNGVGETKIQPLSAPPELNATIAGLSNDTQTTDGRSETEKKVL* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g1002 527 MobiDBLite consensus disorder prediction 134 156 - -
Lan13g1002 527 Pfam Zinc-finger of C2H2 type 352 376 - -
Lan13g1002 527 Pfam Zinc-finger of C2H2 type 216 239 - -
Lan13g1002 527 MobiDBLite consensus disorder prediction 74 90 - -
Lan13g1002 527 PANTHER OS06G0651300 PROTEIN-RELATED 5 495 - -
Lan13g1002 527 MobiDBLite consensus disorder prediction 297 339 - -
Lan13g1002 527 SUPERFAMILY beta-beta-alpha zinc fingers 337 383 IPR036236 -
Lan13g1002 527 SMART c2h2final6 215 239 IPR013087 -
Lan13g1002 527 SMART c2h2final6 352 376 IPR013087 -
Lan13g1002 527 MobiDBLite consensus disorder prediction 508 527 - -
Lan13g1002 527 MobiDBLite consensus disorder prediction 1 49 - -
Lan13g1002 527 MobiDBLite consensus disorder prediction 65 91 - -
Lan13g1002 527 MobiDBLite consensus disorder prediction 129 162 - -
Lan13g1002 527 SMART ZnF_U1_5 212 246 IPR003604 GO:0003676|GO:0008270
Lan13g1002 527 SMART ZnF_U1_5 349 383 IPR003604 GO:0003676|GO:0008270
Lan13g1002 527 Gene3D Classic Zinc Finger 332 382 - -
Lan13g1002 527 Gene3D Classic Zinc Finger 201 245 - -
Lan13g1002 527 PANTHER GLUTENIN, HIGH MOLECULAR WEIGHT SUBUNIT 12-LIKE 5 495 - -
Lan13g1002 527 SUPERFAMILY beta-beta-alpha zinc fingers 207 243 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g1002 Lan-Chr13 14586974 14591882 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g1002 217 376 C2H2 Transcription Factor Family AT5G61190 27.108 7.45e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan13g1002 zf-met 1.3e-07 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan13g1002 13 14586974 14591882 Lan12g0172 12 2416026 2422274 PCT
Lan12g0172 12 2416026 2422274 Lan13g1002 13 14586974 14591882 PCT