Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0995 ATGAGCTTCTTACAAGGAATAATCGATTCATTCAGCTCCGTCTTCTCTCCCGATAATCCTCCTCCTTCTTCTTCTTCTTCTTCTTCTCGATCTCAACCTAATAATCACACTCCTTCATCAATGGAATCACCTTCTCCTTCACTTCCTCATTCAATTTCCAACGAACGCGTCGCTTTCAAGCTCAAAGGATACCTCGATTTGGCCACTCAACAAATCGATAAAGCCGTTAGGGCTGAAGAGTGGGGCTTGATCGATGAAGCAATTCTTCATTACAAGAACGCTCAAAGGATTCTCGTTGAAGCTAATTCAACTCCTGTTCCTTCCTTTATCACTTCAAGTGAACAACAGAAGGTGCAATCACATCGTCAAAAGATATCAAAATGGCAGGGTCAAGTTTCTGAGAGATTACAGGCTCTAAGTAGACGAACAGGTAGCTCATCTGCAAATCAGAGCACCTCAAACTCTGCACGAGCTGCTTCAATTCCAATTAAATCATCCAATGCTAGAAAAAATGTGCTACCAAAAAATCCTCAAAGAACAGGTCAGGTGAATAAAGTAGGAAGTCCAAAATCTAGTCAAGTGTCTGGTGCAAGTTATGACTCAAAACTGGTTGAAATGATTAACACTGCCATAGTAGATAGAAGTCCTTCTGTTAGATGGGAAGATGTTGCTGGGCTTGAGAAGGCAAAGCAAGCTTTAATGGAGATGGTTATTTTGCCAACTAAGAGAAGAGACTTGTTCACTGGTCTTCGAAGGGCAGCTAGAGGTTTGCTTCTCTTTGGTCCACCTGGTAATGGAAAGACCATGCTTGCCAAAGCAGTAGCTTCCGAATCAGAAGCAACATTTTTTAATGTCTCTGCAGCTTCCTTGACATCAAAATGGGTGGGTGAAGGTGAAAAGCTTGTCCGGACACTATTCATGGTAGCTATATCCAGACAGCCATCTGTAATTTTCATTGATGAGATTGATAGTATAATGTCAACAAGGTTGGCAAGTGAGAATGATGCCAGTAGACGATTAAAATCTGAATTTCTTATTCAGTTTGATGGGGTGACCTCCAATCCTGATGATATTGTGATTTTAATTGGTGCGACTAATAAGCCGCAAGAATTGGATGATGCAGTACTCAGGAGGCTGGTAAAGAGAATTTACATACCTTTACCAGGTGAAAATGTTCGGAAACTTCTACTGAAACACAAACTCAAGGGTCAAGCATTCTCCTTGCCTAGCAGAGATCTAGAAAGGCTTGTAAAAGAGACAGAAGGATACTCCGGAAGTGATCTGCAAGCCTTGTGTGAAGAAGCTGCAATGATGCCAATTAGAGAACTGGGTGCTGGCATTCTTACTGTTCAAGCAAATCAGTTACGAGGATTGAGGTTCGAGGATTTCAAGAAGGCAATGGCTGTCATCAGACCAAGCTTAAATAAAAGCAAGTGGGAAGAGCTTGAGCGCTGGAATGAGGTGTTTGGCTCTAATTGA 1479 0.4192 MSFLQGIIDSFSSVFSPDNPPPSSSSSSSRSQPNNHTPSSMESPSPSLPHSISNERVAFKLKGYLDLATQQIDKAVRAEEWGLIDEAILHYKNAQRILVEANSTPVPSFITSSEQQKVQSHRQKISKWQGQVSERLQALSRRTGSSSANQSTSNSARAASIPIKSSNARKNVLPKNPQRTGQVNKVGSPKSSQVSGASYDSKLVEMINTAIVDRSPSVRWEDVAGLEKAKQALMEMVILPTKRRDLFTGLRRAARGLLLFGPPGNGKTMLAKAVASESEATFFNVSAASLTSKWVGEGEKLVRTLFMVAISRQPSVIFIDEIDSIMSTRLASENDASRRLKSEFLIQFDGVTSNPDDIVILIGATNKPQELDDAVLRRLVKRIYIPLPGENVRKLLLKHKLKGQAFSLPSRDLERLVKETEGYSGSDLQALCEEAAMMPIRELGAGILTVQANQLRGLRFEDFKKAMAVIRPSLNKSKWEELERWNEVFGSN* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0995 492 CDD MIT_spastin 61 139 - -
Lan13g0995 492 Pfam ATPase family associated with various cellular activities (AAA) 257 387 IPR003959 GO:0005524|GO:0016887
Lan13g0995 492 Gene3D - 388 470 - -
Lan13g0995 492 PANTHER AAA DOMAIN-CONTAINING 4 492 - -
Lan13g0995 492 Gene3D - 54 143 - -
Lan13g0995 492 CDD AAA 224 387 - -
Lan13g0995 492 SMART smart 61 138 IPR007330 -
Lan13g0995 492 MobiDBLite consensus disorder prediction 1 51 - -
Lan13g0995 492 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 216 489 IPR027417 -
Lan13g0995 492 Pfam AAA+ lid domain 412 446 IPR041569 -
Lan13g0995 492 SMART AAA_5 253 389 IPR003593 -
Lan13g0995 492 MobiDBLite consensus disorder prediction 138 196 - -
Lan13g0995 492 Gene3D - 216 486 IPR027417 -
Lan13g0995 492 PANTHER BNAC04G50250D PROTEIN 4 492 - -
Lan13g0995 492 ProSitePatterns AAA-protein family signature. 359 378 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0995 Lan-Chr13 14466702 14474562 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0995 216 442 Calmodulin-binding Proteins AT3G56690 41.949 6.92e-46 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0995 K13254 - gmx:100780946 770