LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan13g0990	ATGGTGAGAGGAAAGACTCAAATGAAGAGAATAGAGAATGCCACAAGTAGACAAGTAACATTTTCTAAGAGGCGCAATGGACTTCTGAAGAAGGCTTTTGAACTATCAGTTCTTTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTCCAAGAGGAAAACTTTATGAATTTTCAAGCTCCAGCATGCAGGAAACAATTGAACGCTTCCGTAGACATACCAGGAGTTCTCAAACATCACATGTATCAGATGAACAAAATATGCAGCATTTGAAGCATGAAACGGAAAACTTGATGAAGAAGATTGAGCTTCTTGAAGCTTCAAAAGGTAAACTCTTGGGAGAAGGTTTGGGATCATGCTCCTTAGAAGAACTGCAAGATATAGAAAATCAGTTAGAAAAGAGTGTATGTAATGTTCGTGCAAGAAAGACTCAGGTTTACAAGGAACAAATTGAACATCTAAAAGAAAAAGAAAAAGCCTTAATTGCTGAAAATGTCAGACTCTCTGAGCAGTATGGTAACCAGCCAAAGGCAGAAACAAAGGATCAGAAAGAAAATCAAGGCAATGCAGAAAGCAGTAGTCCAGGTACAGATGTGGAAACTGAATTGTTCATTGGACTACACAGGTCTAGTTGA	633	0.3855	MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSMQETIERFRRHTRSSQTSHVSDEQNMQHLKHETENLMKKIELLEASKGKLLGEGLGSCSLEELQDIENQLEKSVCNVRARKTQVYKEQIEHLKEKEKALIAENVRLSEQYGNQPKAETKDQKENQGNAESSSPGTDVETELFIGLHRSS*	211

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan13g0990	210	MobiDBLite	consensus disorder prediction	166	210	-	-
	Lan13g0990	210	CDD	MADS_MEF2_like	3	78	IPR033896	GO:0000977\|GO:0045944
	Lan13g0990	210	Pfam	K-box region	83	170	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Lan13g0990	210	SUPERFAMILY	SRF-like	3	85	IPR036879	GO:0003677\|GO:0046983
	Lan13g0990	210	PANTHER	MADS BOX PROTEIN	1	207	-	-
	Lan13g0990	210	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Lan13g0990	210	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Lan13g0990	210	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Lan13g0990	210	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Lan13g0990	210	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Lan13g0990	210	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Lan13g0990	210	Coils	Coil	87	107	-	-
	Lan13g0990	210	Coils	Coil	143	170	-	-
	Lan13g0990	210	Gene3D	-	14	96	IPR036879	GO:0003677\|GO:0046983
	Lan13g0990	210	PANTHER	MADS-BOX PROTEIN SOC1	1	207	-	-
	Lan13g0990	210	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Lan13g0990	210	ProSiteProfiles	K-box domain profile.	87	177	IPR002487	GO:0003700\|GO:0005634\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan13g0990	Lan-Chr13	14317650	14325743	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan13g0990	1	158	MADS-box Gene Family	AT2G45660	76.582	2.71e-85	248

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Lan13g0990		K-box	2.2e-24	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan13g0990	-		-	gmx:100037477	300.827

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lan13g0990	13	14317650	14325743	Lan9g0792	9	13160406	13173160	PCT
	Lan9g0792	9	13160406	13173160	Lan13g0990	13	14317650	14325743	PCT