Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0987 ATGAATATGATGAGAAGGTTGAAAAGCATTGCTTCTGGGAGGACTTCTATTTCATCAGATCATGGAGGGGATTCTATCACCCAAAAAGCCAAGTTTGAACAAGAGAATGAAGGTAATGTCAATGAGGAAACAAATCGTGTTGAGGGGGGTAACAAAGATGAGGAGCAACCTGTAGATTCATCAAGAGAAACTACTATTGGAACATCTAATTCTGTTGTTTCTACAGTAGCGAGAACTGAGAAGTCGGGTTACGATCAACTTCCGAAAGAATTAAATGAAATGAAAATTATAGATGAGAAGGGAAAAACCAACAATGAGAAGGATATAGAGGCAACTGTTGTGAATGGTAATGGAACAGAACCGGGTCAAATAATTACAACTGCTATCGGTGGTCGAGATGGACAACCAAAGAAGACAATCTCATATATGGCAGAGCGTGTGGTTGGTACTGGTTCTTTTGGTGTTGTATATCAGGCTAAGTGCCTTGAAACTGGTGAAGCAGTCGCAATAAAGAAGGTGTTGCAGGACAAAAGGTATAAGAATAGGGAACTCCAGGTTATGCGTATGCTTGACCATACTAACGTTCTTAAACTGAAGCACTGTTTCTACTCAACAACCGATAAAGATGAGGTGTACCTTAATCTAGTTTTGGAGTATGTACCTGAAACTGTCTACAGAGTTTCAAAGAACTATATAAGGATGCACCTGAACATGCCTATGCTTTTAGTTCAACTGTATACATACCAGATATGTCGTGGCTTAAATTATATGCACCACGTGATCGGTGTCTGCCATCGTGATATCAAACCCCAAAATCTATTGGTTAATCCCCGAAGTCATCAGTTAAAAATATGCGATTTTGGGAGTGCAAAGATGTTGGTGCCTGGTGAACCCAACATATCATACATATGCTCGCGGTATTATAGAGCTCCGGAACTTATATTTGGGGCAACAGAATACACAACTGCGATTGATATTTGGTCTGCTGGTTGTGTATTGGCTGAGCTACTTCTTGGCCAGCCGATGTTTCCCGGAGAGACTGGTGTCGATCAGTTGGTCGAGATAATTAAGATCCTGGGAACACCAACCAGAGAAGAAATAAGGTGCATGAACCCAAATTACACCGAATTTAAGTTTCCTCAAATTAAAGCGCATCCATGGCACAAGGTTTTTCACAAAAAGATGCCTCGTGAAGCAGTGGATCTTGTATCTAGGATGCTTCAGTATTCGCCAAATCTACGTTGCACTGCTTTGGAAGCATGTGCACACCCCTTCTTTGATAATCTGCGAGACCCGAAAGTATTCTTGCCTAATGGGCGGGCAATGCCTCCATTGTTTGATTTCACAGCTCAAGAACTTGCAGGCGCACCTGACGAGTTGCGTCGGCGTCTCATTCCTGAGCATGCAAGGAGTTGA 1416 0.4216 MNMMRRLKSIASGRTSISSDHGGDSITQKAKFEQENEGNVNEETNRVEGGNKDEEQPVDSSRETTIGTSNSVVSTVARTEKSGYDQLPKELNEMKIIDEKGKTNNEKDIEATVVNGNGTEPGQIITTAIGGRDGQPKKTISYMAERVVGTGSFGVVYQAKCLETGEAVAIKKVLQDKRYKNRELQVMRMLDHTNVLKLKHCFYSTTDKDEVYLNLVLEYVPETVYRVSKNYIRMHLNMPMLLVQLYTYQICRGLNYMHHVIGVCHRDIKPQNLLVNPRSHQLKICDFGSAKMLVPGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLAELLLGQPMFPGETGVDQLVEIIKILGTPTREEIRCMNPNYTEFKFPQIKAHPWHKVFHKKMPREAVDLVSRMLQYSPNLRCTALEACAHPFFDNLRDPKVFLPNGRAMPPLFDFTAQELAGAPDELRRRLIPEHARS* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0987 471 MobiDBLite consensus disorder prediction 1 72 - -
Lan13g0987 471 PANTHER SHAGGY-LIKE KINASE 6 471 - -
Lan13g0987 471 Gene3D Transferase(Phosphotransferase) domain 1 222 470 - -
Lan13g0987 471 SUPERFAMILY Protein kinase-like (PK-like) 141 451 IPR011009 -
Lan13g0987 471 ProSitePatterns Protein kinases ATP-binding region signature. 148 172 IPR017441 GO:0005524
Lan13g0987 471 MobiDBLite consensus disorder prediction 26 60 - -
Lan13g0987 471 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672|GO:0006468
Lan13g0987 471 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 6 471 - -
Lan13g0987 471 CDD STKc_GSK3 137 429 IPR039192 -
Lan13g0987 471 SMART serkin_6 142 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan13g0987 471 ProSiteProfiles Protein kinase domain profile. 142 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan13g0987 471 Pfam Protein kinase domain 142 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan13g0987 471 Gene3D Phosphorylase Kinase; domain 1 127 221 - -
Lan13g0987 471 MobiDBLite consensus disorder prediction 9 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0987 Lan-Chr13 14285689 14290816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0987 148 429 Core Cell Cycle Gene Families AT1G76540 35.593 1.02e-54 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Lan13g0987 Pkinase 3.3e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0987 K00924 - gmx:100786458 825.469
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan13g0987 13 14285689 14290816 Lan11g0910 11 9214662 9219661 PCT
Lan11g0910 11 9214662 9219661 Lan13g0987 13 14285689 14290816 PCT