Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0981 ATGTTGGGTCCAGGTACCAATTTGGTGACAACAGTGATTGGATTTGGAATGAGTGCAACTTTCATTGTCTATGTCTGCACTAGAATTATTTGTGCAAGGTTAAGACGTGGTGCTGAATCTCGAATAATATATGAGTTTGAATCAAGGATAGATGTAGAACAGCCAGAACATCATGTTAATGAATCTGAATCCGAACCTGTTCTACTTGATGCAATCCCCACTTTGAAGTTCAACCAAGAAGCATTCAGTTCCATTGAAAATATACAGTGTATAATATGTTTAGCAGATTACAAAGAAAGAGAAATATTGCGCATGATGCCCGAATGTGGCCACACTTTTCATCTTTCTTGCATCGATGTATGGCTGAGAAAACAACCTACCTGTCCAGTATGCCGTCTATCATTGAAAAGTTCTTCTGAAACAAAACGTGAAAGAGATGTAACATTGAGCACTAATCAATCTTTTGACGAGTCTCATACACCCGAAGGGAATGAAGATAATGAAGATATCCAGAGTCATGTTGAATCAACTACTAGTAACTCCTTACAAGCAACTTCTGGAGAACCAGAAGCAAGGCAATGA 582 0.3849 MLGPGTNLVTTVIGFGMSATFIVYVCTRIICARLRRGAESRIIYEFESRIDVEQPEHHVNESESEPVLLDAIPTLKFNQEAFSSIENIQCIICLADYKEREILRMMPECGHTFHLSCIDVWLRKQPTCPVCRLSLKSSSETKRERDVTLSTNQSFDESHTPEGNEDNEDIQSHVESTTSNSLQATSGEPEARQ* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0981 193 MobiDBLite consensus disorder prediction 173 193 - -
Lan13g0981 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 139 IPR013083 -
Lan13g0981 193 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Lan13g0981 193 SUPERFAMILY RING/U-box 80 138 - -
Lan13g0981 193 PANTHER OS11G0150450 PROTEIN 1 183 - -
Lan13g0981 193 SMART ring_2 90 131 IPR001841 -
Lan13g0981 193 MobiDBLite consensus disorder prediction 142 193 - -
Lan13g0981 193 CDD mRING-H2-C3H2C2D_ZSWM2 89 132 - -
Lan13g0981 193 Pfam Ring finger domain 89 132 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0981 Lan-Chr13 14163764 14166280 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0981 85 187 C3H Transcription Factor Family AT4G10150 37.097 3.42e-19 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0981 - - gmx:100780922 302.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan13g0981 13 14163764 14166280 Lan11g0899 11 9016907 9018706 PCT
Lan11g0899 11 9016907 9018706 Lan13g0981 13 14163764 14166280 PCT