Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0978 ATGGGTATTGGTGGTAATTTCTGGGACCTGTTGAAACCCTATGCACGCAACGAAGGTTTTGATTTCTTGAGGAACAAGCGAGTCGCTGTGGACCTTTCATTCTGGATTGTTCAACACACTAATGCTATCAAAACCCATGTTAGAAAACCACACCTTAGACTCACCTTCTTCAGAACCATTAATCTCTTTTCTAAGTTTGGAGCATTCCCGGTGTTTGTAGTTGATGGGACTCCGTCACCTTTGAAGTCACAGGCTAGGATTGCGAGATTTTTCCGGTCTTCTGGCATTGAATTGAATAGCTTGCCAGTGCCTGAACAAGGTGTTTCAGCTGAGAGGAACCGTTCATTTTCAAGCTGTGTTAAAGAATGTGTGGAACTTGTGGAACTACTTGGTATGCCTGTATTAAAGGCTAAAGGAGAGGCTGAAGCACTCTGTGCTCAATTAAATAGTGAAGGTCATGTAGATGCTTGCATTACAGCCGACAGTGATGCGTTCCTTTTTGGAGCCAAATGCATTATAAAATCTTTCCGCCCGAATTCCAAAGAACCATTTGAATGTTACAATATCTCAGATATTGAAGCTGGCCTTGGGTTGAAGAGGAAACAATTAATAGCTATCTCTCTTTTGGTTGGAAATGATCATGATATGAATGGTGTTCGAGGAGTTGGGCTTGAGACTGCTCTTCATTTTGTTCAGGCATTTAATGAAGATGATATATTGAATAGATTACATGAGATAGGTAAAGGGAATGCATTACAAGTTCCCATCAGAACTGAATCGGAGGACGATATGCATCCGGATGGAAACTCCCCAAATACAAAACAATCTCACTGCTCATTCTGTGGGCATCCAGGCAGCAAACGAGACCATATCATGTTCTCCTGTGAATATTGTATATCAAATGATGGCCAAGGTTGCATACTAAAAGAAGAAGGTTTTAAATGCAATTGCTTCTCATGTGGTAGGTATAGGAAGCATAAGGAACAGAAAAGGCTGGAAAATTGGCACACAAAAGTTTGTCACAAGATTGCAGAGGAGCCAAATTTTCCCAATGATGAAATCATTGATATGTATTTATGTAGTGATAATGGTCACTTTTCTGCAAACGATGGCCCTCACATCACATGGGAGAGGCCCAATATTGGGATGCTGATTGATTTTTTAAACTTCCATCAGCGTTGGGAGCCGTCGTACATTCAACGGTTGATGTTTCCTATGATGTCCACCATGTTTTTGAGAGATAAAGCTTCTACTACAGTAGAAAGTTTGTTCTTTGGGCAATATGAGTTCGATTCATTACACCGTGTGAAGAGTATATATGGATTTCAGTTGTATGTGGTAAAGTGGAAACGAGCAGCAGGAAATTTCACGTATGCAATTCGTTCAAACGAGTCTGGCACACAACAAGATGTTGTAGAGCATGACAAATTGGTGGATCTACTGGACGACTGTGATGTTCCTATGATTCACGTGGATGATGGATGCAGTTTTTTGTTGACAGATGAAAATATGGACCTTGTAGGAGCTGCTTTTCCTGAAGAAGTTAAAAGGTTTCGGCAGGAACAGGAACAGAAGGATTTGAAAAGAAAAAGGAATTCTACTTCAAGATCTCAAGAATATGAAAATGAAAATTCAGCATCACCAAACTCCAAAAGTATCCAACTCAACATTACAAAGTTCTATCCATCAACCAAAATTAAACATGAGTCAAAACAAGAAGAGTCATCTAAGAAACCCGACACCGAAGAGGGTGAAGCCTCAGCAAATAAAAGGAATGTGTCGAGTTCTAATCTTCCAAAATCTGTGAGGCGTCGCCTTTTGTTTGACTAG 1830 0.4033 MGIGGNFWDLLKPYARNEGFDFLRNKRVAVDLSFWIVQHTNAIKTHVRKPHLRLTFFRTINLFSKFGAFPVFVVDGTPSPLKSQARIARFFRSSGIELNSLPVPEQGVSAERNRSFSSCVKECVELVELLGMPVLKAKGEAEALCAQLNSEGHVDACITADSDAFLFGAKCIIKSFRPNSKEPFECYNISDIEAGLGLKRKQLIAISLLVGNDHDMNGVRGVGLETALHFVQAFNEDDILNRLHEIGKGNALQVPIRTESEDDMHPDGNSPNTKQSHCSFCGHPGSKRDHIMFSCEYCISNDGQGCILKEEGFKCNCFSCGRYRKHKEQKRLENWHTKVCHKIAEEPNFPNDEIIDMYLCSDNGHFSANDGPHITWERPNIGMLIDFLNFHQRWEPSYIQRLMFPMMSTMFLRDKASTTVESLFFGQYEFDSLHRVKSIYGFQLYVVKWKRAAGNFTYAIRSNESGTQQDVVEHDKLVDLLDDCDVPMIHVDDGCSFLLTDENMDLVGAAFPEEVKRFRQEQEQKDLKRKRNSTSRSQEYENENSASPNSKSIQLNITKFYPSTKIKHESKQEESSKKPDTEEGEASANKRNVSSSNLPKSVRRRLLFD* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0978 609 Gene3D - 198 260 - -
Lan13g0978 609 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 597 IPR006084 -
Lan13g0978 609 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 25 39 IPR006084 -
Lan13g0978 609 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 70 89 IPR006084 -
Lan13g0978 609 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 127 144 IPR006084 -
Lan13g0978 609 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 148 168 IPR006084 -
Lan13g0978 609 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 203 218 IPR006084 -
Lan13g0978 609 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 198 413 IPR036279 -
Lan13g0978 609 CDD PIN_GEN1 5 202 - -
Lan13g0978 609 Pfam XPG N-terminal domain 1 89 IPR006085 GO:0004518
Lan13g0978 609 MobiDBLite consensus disorder prediction 564 587 - -
Lan13g0978 609 SMART xpgn3 1 96 IPR006085 GO:0004518
Lan13g0978 609 Gene3D - 2 197 - -
Lan13g0978 609 SUPERFAMILY PIN domain-like 6 213 IPR029060 -
Lan13g0978 609 SMART xpgineu 128 198 IPR006086 GO:0004518
Lan13g0978 609 MobiDBLite consensus disorder prediction 519 537 - -
Lan13g0978 609 MobiDBLite consensus disorder prediction 538 563 - -
Lan13g0978 609 Pfam XPG I-region 131 213 IPR006086 GO:0004518
Lan13g0978 609 PANTHER FLAP ENDONUCLEASE GEN-LIKE 1 1 597 - -
Lan13g0978 609 MobiDBLite consensus disorder prediction 519 609 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0978 1 232 Core DNA Replication Machinery Family AT5G26680 29.412 2.49e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0978 K15338 - gmx:100791251 915.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan13g0978 13 14114219 14119015 Lan13g0978 13 14114219 14119015 ECH