Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0889 ATGAACAACACTAACAACAACAACAACAGACCGAGATATCCACCCGGTATTGGTTATGGACGTGGTGGTGGAGGGTTCACTCAGAACCCTAACCAAAACGAACCGTTTCAACCAAGGTCCTCTTACCAGCACCAGCAACAGCACTACGGGCAGAGGAATTTTGTTCCGCAACAACAACAACAACAGCAGCAACAACAACATCAGCAACAACAACATCAACAGCAGCAGCAACAGTGGCTGAGAAGGGCGCAGTTAGGTGGTGGCGAATCGAACCTCAACGACGAGGTTGAAAAGAATGTCCAGACGGAAGCTGATGACTCAAGCTCACAAGATTGGAAGGCAAGACTAAAGGCTCCACCAGCTGATACACGCTATAAGACAGAGGATGTGACAGCAACTAAAGGAAATGAATTTGAGGATTACTTTTTGAAGCGTGAGCTGCTCATGGGTATATATGAGAAGGGTTTTGAAAGGCCTTCTCCAATCCAAGAAGAAAGCATTCCAATTGCCCTTACTGGTAGTGACATTCTTGCTAGAGCAAAAAATGGAACAGGCAAAACAGCTGCATTTTGCATTCCTGCATTGGAAAAAATTGATCAGGATACTAATGTTATTCAAGCTGTTATACTGGTCCCCACTCGAGAATTGGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTTGGAAAGCATTTGAAGATTGAAGTTATGGTCACAACAGGTGGTACCAGCTTGAAAGATGATATAATGCGCTTATATCAACCAGTTCATTTGCTAGTTGGAACTCCAGGAAGAATATTGGATCTTGCTAAGAAGGGTGTTTGTATTCTGAAAGATTGCTCTATGCTTGTTATGGATGAGGCTGATAAGCTTTTGTCCCCGGAGTTCCAGCCTTCCATACAGCAACTGATTCAATTTCTTCCTTCAAACCGTCAAATTCTAATGTTTTCAGCAACATTTCCTGTTACAGTAAAGGACTTCAAAGATAGATATCTTCAAAAACCATATGTTATTAACCTTATGGATGAGCTAACTCTGAAGGGTATCACACAATACTATGCATTTGTGGAAGAGCGGCAGAAAGTCCACTGCCTCAATACTCTATTTTCTAAGTTGCAAATAAACCAGTCGATCATCTTCTGCAATTCAGTGAATCGGGTTGAACTTCTTGCCAAGAAAATCACAGAACTTGGTTATTCATGTTTCTATATTCACGCAAAGATGTTGCAAGATCATCGTAATAGAGTATTCCATGACTTCCGCAACGGTGCATGCCGAAATCTTGTTTGTACCGATCTTTTTACTAGGGGAATAGACATCCAGGCCGTCAATGTTGTTATTAATTTTGATTTTCCCAAGAACTCAGAAACTTACTTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGGCACCTTGGTTTAGCAGTGAATTTGATCACTTATGAGGATCGCTTTAACTTATATAGGATTGAACAAGAACTTGGCACTGAAATAAAGCAAATTCCACCTTTCATTGACCAGGCAGTTTATTGCCGGTGA 1533 0.4168 MNNTNNNNNRPRYPPGIGYGRGGGGFTQNPNQNEPFQPRSSYQHQQQHYGQRNFVPQQQQQQQQQQHQQQQHQQQQQQWLRRAQLGGGESNLNDEVEKNVQTEADDSSSQDWKARLKAPPADTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDTNVIQAVILVPTRELALQTSQVCKELGKHLKIEVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVMDEADKLLSPEFQPSIQQLIQFLPSNRQILMFSATFPVTVKDFKDRYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPFIDQAVYCR* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0889 510 Gene3D - 95 340 IPR027417 -
Lan13g0889 510 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 6 9 510 - -
Lan13g0889 510 CDD DEADc_DDX6 138 338 - -
Lan13g0889 510 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 136 164 IPR014014 GO:0003724
Lan13g0889 510 MobiDBLite consensus disorder prediction 1 80 - -
Lan13g0889 510 Pfam DEAD/DEAH box helicase 161 325 IPR011545 GO:0003676|GO:0005524
Lan13g0889 510 Pfam Helicase conserved C-terminal domain 362 468 IPR001650 -
Lan13g0889 510 Gene3D - 341 509 IPR027417 -
Lan13g0889 510 MobiDBLite consensus disorder prediction 25 80 - -
Lan13g0889 510 CDD SF2_C_DEAD 348 477 - -
Lan13g0889 510 SMART helicmild6 387 468 IPR001650 -
Lan13g0889 510 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 9 510 - -
Lan13g0889 510 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 283 291 IPR000629 -
Lan13g0889 510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 490 IPR027417 -
Lan13g0889 510 Coils Coil 58 78 - -
Lan13g0889 510 SMART ultradead3 155 351 IPR014001 -
Lan13g0889 510 MobiDBLite consensus disorder prediction 100 120 - -
Lan13g0889 510 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 347 507 IPR001650 -
Lan13g0889 510 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 167 337 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0889 Lan-Chr13 11259572 11266040 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0889 136 500 Eukaryotic Initiation Factors Gene Family AT3G19760 38.420 6.92e-94 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0889 K12614 - fve:101307921 839.336