LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan13g0833	ATGTGCTTATTACAAACGGTGGCGCACCAAAGTAGTTCAGGCGAGTTCATCAGGTTCACCGGCGGCGATGATGAACATGGTGAAGGAGATGATGGTGGAAGTTCTAGAACATCTGAGTCACTAGGATTCAATCAAGTGATGGAACAAGGAGAAGTGGCAATGCAAGGTTCTTCTGTTGCTTCAGGTTATAGCAGAGAAAGAGAGTACACAGAAATGGTTTCTGCTCTGACCCATGTTGTGTCAGGATCAGGCCAGAGAAGAAGTAAATGGGTTCAGATCCATGGAAGTGGTGTATCTTCTTCAAATCCTTCTACTTTGTCTTCTGGCTCATGGGTTGGGCACAAAAGAGGGCGTGGTGAAGAGAGTAGTGCTTCAAATCAGTTGATGCAACAAGCTGTTCCTAGAAACTTCAGAACCATTGGTGACTTCAAGATACCACTTACACATGCAGAGTCATCAGCAGAAGAAGCTGCCACCACCATCATCACAACCACATCGGAGGCGACACCTTCGAGTGAAACGGCTTCAAATGAAGAGAAGAGAAGGTACAGGGGAGTGAGGCAGAGGCCATGGGGAAAATGGGCAGCAGAAATTCGTGATCCACACAAAGCAGCAAGAGTTTGGCTTGGTACATTTGACACAGCAGAAGCTGCAGCAAGAGCTTATGATGAAGCTGCATTAAGGTTTAGAGGCAACAAAGCAAAGCTAAATTTCCCTGAAAATGTTAGAGCACTGCAACCACCAGTGCACACTTTTCCAGCCACTACCACGATAGCAACACGGCCGCAATTGCAGCCGAGGCTCATGCAGCAGCAGCAACAACAGCCGTTAGTTCAGGGGTCCTCTGATTTGATCAGAGATTATTGGGAATATTCTCAACTTCTTCAGAGTTCTGGTGATTTTCAACAACAACAATTACAACTACAACACCAACCTTCTAGTTTGTTGCAGCAGTGGTACTATAATACTTCACAATTGGCTGCACTTCAATCATCTTCATTGTTATCATCATTGCCTTCTTTGTCTTCTTCTTCTATGTCAGCAAATGCTTCATTTTCACCATCAAGTCAACTTTCCTCTGCTTCATTTCCCCTGTCTTCTAGTCAACAAATGGGTTATTTCCGGCCACCGGGATACCAAACTCAAGGCGGCGGCAGAGGTACCGGATTGGAGTATCTGTCGTCAACTTGGTCAGATATCAGTGGCTATCCGCCGCCTCCCAATTGA	1227	0.4588	MCLLQTVAHQSSSGEFIRFTGGDDEHGEGDDGGSSRTSESLGFNQVMEQGEVAMQGSSVASGYSREREYTEMVSALTHVVSGSGQRRSKWVQIHGSGVSSSNPSTLSSGSWVGHKRGRGEESSASNQLMQQAVPRNFRTIGDFKIPLTHAESSAEEAATTIITTTSEATPSSETASNEEKRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPENVRALQPPVHTFPATTTIATRPQLQPRLMQQQQQQPLVQGSSDLIRDYWEYSQLLQSSGDFQQQQLQLQHQPSSLLQQWYYNTSQLAALQSSSLLSSLPSLSSSSMSANASFSPSSQLSSASFPLSSSQQMGYFRPPGYQTQGGGRGTGLEYLSSTWSDISGYPPPPN*	409

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan13g0833	408	MobiDBLite	consensus disorder prediction	94	111	-	-
	Lan13g0833	408	SUPERFAMILY	DNA-binding domain	182	240	IPR016177	GO:0003677
	Lan13g0833	408	MobiDBLite	consensus disorder prediction	387	401	-	-
	Lan13g0833	408	MobiDBLite	consensus disorder prediction	367	408	-	-
	Lan13g0833	408	ProSiteProfiles	AP2/ERF domain profile.	182	239	IPR001471	GO:0003700\|GO:0006355
	Lan13g0833	408	MobiDBLite	consensus disorder prediction	94	126	-	-
	Lan13g0833	408	PANTHER	DNA-BINDING DOMAIN	64	370	IPR044808	GO:0003700\|GO:0009873
	Lan13g0833	408	CDD	AP2	182	241	IPR001471	GO:0003700\|GO:0006355
	Lan13g0833	408	SMART	rav1_2	182	245	IPR001471	GO:0003700\|GO:0006355
	Lan13g0833	408	MobiDBLite	consensus disorder prediction	15	39	-	-
	Lan13g0833	408	Pfam	AP2 domain	182	231	IPR001471	GO:0003700\|GO:0006355
	Lan13g0833	408	MobiDBLite	consensus disorder prediction	19	33	-	-
	Lan13g0833	408	Gene3D	AP2/ERF domain	181	241	IPR036955	GO:0003700\|GO:0006355
	Lan13g0833	408	MobiDBLite	consensus disorder prediction	164	184	-	-
	Lan13g0833	408	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110	64	370	-	-
	Lan13g0833	408	PRINTS	Ethylene responsive element binding protein signature	183	194	IPR001471	GO:0003700\|GO:0006355
	Lan13g0833	408	PRINTS	Ethylene responsive element binding protein signature	205	221	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan13g0833	Lan-Chr13	9382142	9384178	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan13g0833	176	256	AP2-EREBP Transcription Factor Family	AT2G33710	71.605	6.18e-35	127

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lan13g0833		AP2	8e-15	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan13g0833	-		-	gmx:100817436	318.931