Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0819 ATGCCAGTCATGAAAAAGAATTCTGAGCAGACTTGTATTGGATCTGCGCTTGACAAGTTGGCGAAGCAAATTGGGGAACCTGTTGACTTTGAACTGCCAGAGTCGTTTACTAAATCGAAGCCAATGCAATATACCTTTATAAAGCGTAATATATATCTCACAAAGAAGTTCAAGAGACGGTTTGAAGATGATGGAATATTCTGTTCCTGCACTGCTTCACCTGAATCTCCTAGTGTATGTGGTAGAGATTGCCACTGTGGGATGCTTCTGTCTAGCTGTTCTTCAGGTTGCAAATGTGGGAGCTCCTGTCTGAACAAAGCATTTCAGCATCGTCCTGTGAAAAAAATGAAATTGATTCAGACTGAGAAATGTGGTTCTGGAATTGTGGCCGATGAAGATATCAAGCTAGGGGACTTTGTTATAGAATATGTTGGAGAAGTCATCGATGACAAAACATGTGAAGAAAGGCTTTGGAACATGAAACATCGTGGGGAAACAAACTTTTACTTGTGTGAAATCAATCGAGATATGGTGATTGATGCAACATATAAGGGAAACAAATCAAGATATATCAATCATAGTTGCTGCCCCAATACTGAGATGCAGAAATGGATAATTGATGGTGAAACAAGAATTGGCATATTTGCAACTCGTGACATACAAAAGGGCGAGCATTTGACTTATGATTACCAGTTTGTTCAGTTTGGTGCAGATCAAGATTGCCATTGTGGTGCTGTTGAATGTAGGCGTAAGCTTGGTGTCAAACCTGGCAAGCCTAAAATGTCTTCAGATAGTGCATTAAAATTAGTTGCATATCAGGTTTATGGGAATGGATGTTTGCAAATTGGAAGTTCTCATGTTGTTGACCAATCAAAGTGCTTACGCAATTGCATTGGTGAAGTTATTGGGTTAAAACACCTTGAAAATGTGAGGTTTGGGATTATTAAACGGTTTGATAGATATTCCCAAAAACACTCGATCATGTTTGAGGATGGTTGTGTTGAAATTTATGACCTGTCAAAAGAAGACTGGGAATTAGTGAGATTGTGA 1050 0.3905 MPVMKKNSEQTCIGSALDKLAKQIGEPVDFELPESFTKSKPMQYTFIKRNIYLTKKFKRRFEDDGIFCSCTASPESPSVCGRDCHCGMLLSSCSSGCKCGSSCLNKAFQHRPVKKMKLIQTEKCGSGIVADEDIKLGDFVIEYVGEVIDDKTCEERLWNMKHRGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIQKGEHLTYDYQFVQFGADQDCHCGAVECRRKLGVKPGKPKMSSDSALKLVAYQVYGNGCLQIGSSHVVDQSKCLRNCIGEVIGLKHLENVRFGIIKRFDRYSQKHSIMFEDGCVEIYDLSKEDWELVRL* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0819 349 SMART set_7 114 237 IPR001214 GO:0005515
Lan13g0819 349 ProSiteProfiles AWS domain profile. 63 112 IPR006560 GO:0005634|GO:0018024
Lan13g0819 349 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 11 346 - -
Lan13g0819 349 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 38 296 IPR025787 -
Lan13g0819 349 ProSiteProfiles Post-SET domain profile. 237 253 IPR003616 -
Lan13g0819 349 ProSiteProfiles SET domain profile. 114 231 IPR001214 GO:0005515
Lan13g0819 349 SMART PostSET_3 237 253 IPR003616 -
Lan13g0819 349 Pfam SET domain 125 230 IPR001214 GO:0005515
Lan13g0819 349 SUPERFAMILY SET domain 26 243 IPR046341 -
Lan13g0819 349 SMART shorttest3 63 113 IPR006560 GO:0005634|GO:0018024
Lan13g0819 349 Gene3D SET domain 23 269 IPR046341 -
Lan13g0819 349 PANTHER SET DOMAIN PROTEINS 11 346 - -
Lan13g0819 349 CDD SET_ASHR3-like 115 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0819 Lan-Chr13 8865675 8873473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0819 87 249 C2H2 Transcription Factor Family AT2G23740 34.426 5.37e-23 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lan13g0819 SET 5.3e-19 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1153 8 15547486 15556799 Lan13g0819 13 8865675 8873473 LSH