Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0798 ATGCCTTCTCTCACTCTATCAAACGACATCGTTTCACCCGAGAACAAACACAAAAAACATAAGAAAAACAAAAACAACAACCACAACACAGAGAAGTCCCAGAACGACGCCGTTTCTGATACGAAGAAGAAGAAGAACGGTTCCAAGGAGATAAAGAAGAGGAAGAAGCATTCATCATCAGAAGGTGATGATGATTATGATGAGAAGAGTGATGCTGTTGAAGGATTGAAATCGAAGAAGAAGAAGAATAAGAAGGTGAAGGTGGAGATGGAAGAAGAAGATGTAGAAGAAGAAGAGGTTGAGATTGAAGGTGAGAATCCGAATGCGGTTTCCATGTTTAGAATATCGGAACCGTTGAAGGTGAAATTGAAGGAGAAGGGGATTGAAGCATTGTTTCCTATTCAAGCCATGACATTCGATATCATCCTTGATGGTTCCGATTTGGTTGGTCGTGCTCGCACTGGTCAGGGTAAAACTCTGGCCTTTGTGTTGCCTATATTAGAGTCTTTAACAAATGGACCGGCAAAAGCATCGAGAAAGATGGGCTATGGGAGGTCTCCGAGTGTCATTGTGCTTCTACCTACTAGGGAGTTGGCCAAACAGGTGCATGCTGATTTTGAAGTTTATGGTGGGGCAATGGGATTGGCTTCTTGCTGTTTATATGGTGGGGCTCCATATCAGACTCAAGAGATTAAGCTCAAGAGGGGTGTTGATGTTGTTATTGGCACACCTGGCCGCATAAAGGATCATATAGAGAGGGGAAATATTGACCTGAGCCTACTAAGGTTCCGTGTTCTTGATGAGGCTGATGAGATGCTGAGGATGGGTTTTGTTGAAGATGTTGAACTCATTCTAGGTAAGGTAGATGATGTTAACAAAGTTCAGACACTTCTTTTCAGTGCTACTTTACCAGACTGGGTTAAACAGATTTCTACAAGATTTTTGAAACGTAATAAGAAAACTGCTGATCTTGTTGGGAATGAGAAAATGAAGGCTAGCAACAATGTTAGGCATATTGTTCTTCCATGTAATAGTTCTGCTAGGTCCCAGCTTATCCCTGACATTATTCGCTGTTATAGCAGTGGAGGCCGAACAATTATTTTTACTGAGAAAAAGGAGTCTGCTTCTGAGCTTGCGGGGGTCTTGCCTGGAGCAAAACCTCTCCATGGTGACATCCAACAGTCACAACGTGAGGTTACACTGGCCGGTTTTAGGTCTGGAAAATTCATGACATTGGTGGCCACAAATGTGGCAGCTAGGGGTCTGGATATCAATGATGTTCAGTTAATTATCCAGTGTGAGCCTCCACGTGATGTAGAAGCATATATCCATCGTTCTGGACGTACAGGAAGAGCTGGTAATACTGGAGTTGCTGTAATGCTTTATGATCCCAGAAAGTCAAGTGTATCTAGAATAGAAAGAGAATCAGGTGTGAAATTTGAACACATATCTGCTCCTCAGCCTGACGATATTGCCAAAGCTGTTGGTGGGGAAGCTGCTGAAATGATTTTGCAAGTGTCTGATAGTGTTGTTCCTGCATTCAAGCCTACTGCTGAGGGGCTTCTGAATAACAGTGGTTTATCAGCTGTTGAGTTACTTGCAAAAGCTCTTGCCAAGGCTGTTGGTTTTACTGAGATAAAGAAAAGATCGCTTCTGACTTCCATGGAGAATTATGTTACATTACTTCTTGGGATTGGAAAACCCATCTTCACCCCATCGTTTGCATTTGGAGTCTTGAGGAGATTAGTGCCGGAGGAGATGGTTAACACAGTGCAGGGTCTTACTATCACTGCAGATGGAAATGCTGCTGTTTTTGACGTACCGGCGAAAGATTTAGATGCATTTATAACCGGCCAGCAAAATGCTGCTAATGTAAGTCTGCAGGTGGTGAAAGCATTGCCCCGTTTGCAAGAAAGAGACCAATCGAAAGTGGGTAGGTATGGTGGCGGCGGCGGCGGCGGTCGAGGGTTTAATGATAGAAGTGGTGGAAATAGATTTGGTGGAAGAGGAGGTGGGAGGAATGGTAGGTTTTCAAATGGTTTTGGTGGTGGGAGAGGTGGGAACAGAGGAGGAAGGAGATGGTAA 2085 0.4379 MPSLTLSNDIVSPENKHKKHKKNKNNNHNTEKSQNDAVSDTKKKKNGSKEIKKRKKHSSSEGDDDYDEKSDAVEGLKSKKKKNKKVKVEMEEEDVEEEEVEIEGENPNAVSMFRISEPLKVKLKEKGIEALFPIQAMTFDIILDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKASRKMGYGRSPSVIVLLPTRELAKQVHADFEVYGGAMGLASCCLYGGAPYQTQEIKLKRGVDVVIGTPGRIKDHIERGNIDLSLLRFRVLDEADEMLRMGFVEDVELILGKVDDVNKVQTLLFSATLPDWVKQISTRFLKRNKKTADLVGNEKMKASNNVRHIVLPCNSSARSQLIPDIIRCYSSGGRTIIFTEKKESASELAGVLPGAKPLHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSRIERESGVKFEHISAPQPDDIAKAVGGEAAEMILQVSDSVVPAFKPTAEGLLNNSGLSAVELLAKALAKAVGFTEIKKRSLLTSMENYVTLLLGIGKPIFTPSFAFGVLRRLVPEEMVNTVQGLTITADGNAAVFDVPAKDLDAFITGQQNAANVSLQVVKALPRLQERDQSKVGRYGGGGGGGRGFNDRSGGNRFGGRGGGRNGRFSNGFGGGRGGNRGGRRW* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0798 694 MobiDBLite consensus disorder prediction 1 104 - -
Lan13g0798 694 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 265 273 IPR000629 -
Lan13g0798 694 Coils Coil 73 103 - -
Lan13g0798 694 Pfam Helicase conserved C-terminal domain 355 453 IPR001650 -
Lan13g0798 694 MobiDBLite consensus disorder prediction 642 694 - -
Lan13g0798 694 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 27 673 - -
Lan13g0798 694 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 7 27 673 - -
Lan13g0798 694 SMART ultradead3 127 339 IPR014001 -
Lan13g0798 694 CDD SF2_C_DEAD 336 462 - -
Lan13g0798 694 Gene3D - 557 632 - -
Lan13g0798 694 Gene3D - 331 556 IPR027417 -
Lan13g0798 694 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 139 321 IPR014001 -
Lan13g0798 694 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 466 IPR027417 -
Lan13g0798 694 CDD DEADc 123 317 - -
Lan13g0798 694 Pfam DEAD/DEAH box helicase 132 309 IPR011545 GO:0003676|GO:0005524
Lan13g0798 694 Gene3D - 58 321 IPR027417 -
Lan13g0798 694 MobiDBLite consensus disorder prediction 54 78 - -
Lan13g0798 694 CDD GUCT_RH7_like 549 634 - -
Lan13g0798 694 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 350 492 IPR001650 -
Lan13g0798 694 Pfam GUCT (NUC152) domain 542 637 IPR012562 GO:0003723|GO:0004386|GO:0005524
Lan13g0798 694 SUPERFAMILY RNA-binding domain, RBD 546 629 IPR035979 GO:0003676
Lan13g0798 694 SMART helicmild6 376 453 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0798 Lan-Chr13 8623772 8635081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0798 145 459 Eukaryotic Initiation Factors Gene Family AT1G72730 30.408 8.57e-39 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0798 K16911 - jre:108988915 897.116