Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0788 ATGGACGTAGATGGGGGAAACAAGCGCGTGTTCAACCGACTCGGTGGAACCGCGGGTGATCCAAGAAACCAGAAAGTGTGCTATCATTGGCTAGCGGGAAAGTGCAATCGTCACCCATGCCAGTTTCTTCATAGTGAGTTGCCTCCTCACAACTCCAATGGCGCCTTTTCCAATAGGCCTTATGGGTCTGGGGAAAATTTAAGCTTTAACGGTCCTTCGCGCCGGACATCGAATTTCAACACATGGGGGCGTGGAGGTGGGGGCAGAGGTGGCGGTAGAGGTGGTGGCCGCAGTGGAGAAGTAGTTATGAAGGGTGATAAAATTTGTAATTATTGGGTTCAGGGGAATTGTAGTTTTGGAGAGAGATGTAAGTTCCTTCATTCTTGGAGTTTAGGAGATGGTTTTTCTTTGTTGACCCAGCTTGAAGGCCATGAGAAGGTTGTAAGTGGAATAGTCTTTCCCTCCGGTTCGAATCAGCTTTATACGGGAAGTACTGATGAGACTGTAAGGGTTTGGGACTGCCAGTCTGGACAGTGTGCAGCTGCGATCAATCTTGGTGGTGAAGTAGGTTGCATGATCAGTGAAGGTCCTTGGGTTTTTGTTGGCATACCCAATTTTGTCAAGGCGTGGAACACACAAAACTTATTGGAGCTAAGTCTTAGCGGTCCCGTCGGACAAGTTTATGCTCTTTCTGTGATTAACGATATGCTCTTTGCCGGTACGCAGGATGGATCTATATTAGTTTGGAAGTTTAATTTAACTGCCAACTGCTTTGAACCAGCTGCATCACTTAAAGGTCATTCCCGTGGTGTTGTTTCATTAGTTGTTGGGGCTAATAGACTCTACTCTGGTTCAATGGACAACACAATAAGAGTCTGGAACCTTGAAACCCTGCAGTGTTTACAGACACTTTCAGAGCACACTTCTGTGGTGATGTCCGTACTCTGCTGGGACCAGTTCCTTTTATCTTGTTCATTGGACAAGACAGTCAAGGTGTGGTTTGCCACAGAAAGTGGAAACCTTGAAGTGACATACACTCATCATGAAGAAAATGGTATAGTTACCCTCTGTGGGATGCATGATTCACAAGGCAAGCCCATTTTGGTGTGTTCTTGCAATGATAATACTGTGCGCCTCTATGATCTGCCATCATTTGCAGAGAGAGGCAAGATATTCACAAAACAGGAAGTAAGAGCAATTCAGTCAGGGCCTGGTGGCATATTCTTCACTGGTGATGGAACAGGTCAAGTGAAAGTGTGGAATTGGATACCTGAGCCAACTACTTCTATCCAATAA 1296 0.4591 MDVDGGNKRVFNRLGGTAGDPRNQKVCYHWLAGKCNRHPCQFLHSELPPHNSNGAFSNRPYGSGENLSFNGPSRRTSNFNTWGRGGGGRGGGRGGGRSGEVVMKGDKICNYWVQGNCSFGERCKFLHSWSLGDGFSLLTQLEGHEKVVSGIVFPSGSNQLYTGSTDETVRVWDCQSGQCAAAINLGGEVGCMISEGPWVFVGIPNFVKAWNTQNLLELSLSGPVGQVYALSVINDMLFAGTQDGSILVWKFNLTANCFEPAASLKGHSRGVVSLVVGANRLYSGSMDNTIRVWNLETLQCLQTLSEHTSVVMSVLCWDQFLLSCSLDKTVKVWFATESGNLEVTYTHHEENGIVTLCGMHDSQGKPILVCSCNDNTVRLYDLPSFAERGKIFTKQEVRAIQSGPGGIFFTGDGTGQVKVWNWIPEPTTSIQ* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0788 431 Gene3D - 219 430 IPR015943 GO:0005515
Lan13g0788 431 PRINTS G protein beta WD-40 repeat signature 160 174 IPR020472 -
Lan13g0788 431 PRINTS G protein beta WD-40 repeat signature 281 295 IPR020472 -
Lan13g0788 431 PRINTS G protein beta WD-40 repeat signature 321 335 IPR020472 -
Lan13g0788 431 Gene3D - 120 218 IPR015943 GO:0005515
Lan13g0788 431 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 141 173 - -
Lan13g0788 431 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 303 IPR001680 GO:0005515
Lan13g0788 431 MobiDBLite consensus disorder prediction 74 97 - -
Lan13g0788 431 ProSitePatterns Trp-Asp (WD) repeats signature. 281 295 IPR019775 -
Lan13g0788 431 ProSiteProfiles Zinc finger C3H1-type profile. 21 47 IPR000571 GO:0046872
Lan13g0788 431 ProSiteProfiles Zinc finger C3H1-type profile. 103 130 IPR000571 GO:0046872
Lan13g0788 431 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 428 - -
Lan13g0788 431 ProSiteProfiles Trp-Asp (WD) repeats profile. 141 182 IPR001680 GO:0005515
Lan13g0788 431 SUPERFAMILY CCCH zinc finger 105 128 IPR036855 GO:0046872
Lan13g0788 431 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 264 297 - -
Lan13g0788 431 Pfam Zinc finger domain 109 127 - -
Lan13g0788 431 PANTHER - 1 428 IPR044715 -
Lan13g0788 431 SMART c3hfinal6 105 129 IPR000571 GO:0046872
Lan13g0788 431 SMART c3hfinal6 22 46 IPR000571 GO:0046872
Lan13g0788 431 SUPERFAMILY WD40 repeat-like 134 423 IPR036322 GO:0005515
Lan13g0788 431 SMART WD40_4 213 250 IPR001680 GO:0005515
Lan13g0788 431 SMART WD40_4 338 381 IPR001680 GO:0005515
Lan13g0788 431 SMART WD40_4 297 334 IPR001680 GO:0005515
Lan13g0788 431 SMART WD40_4 134 173 IPR001680 GO:0005515
Lan13g0788 431 SMART WD40_4 384 421 IPR001680 GO:0005515
Lan13g0788 431 SMART WD40_4 257 294 IPR001680 GO:0005515
Lan13g0788 431 Pfam WD domain, G-beta repeat 343 381 IPR001680 GO:0005515
Lan13g0788 431 Pfam WD domain, G-beta repeat 137 173 IPR001680 GO:0005515
Lan13g0788 431 Pfam WD domain, G-beta repeat 299 333 IPR001680 GO:0005515
Lan13g0788 431 Pfam WD domain, G-beta repeat 260 294 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0788 Lan-Chr13 8369664 8375746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0788 216 420 Acyl Lipid Metabolism Gene Families AT3G18860 25.455 9.71e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan13g0788 WD40 0.11 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0788 - - mtr:MTR_6g465150 725.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0912 7 8488122 8492755 Lan13g0788 13 8369664 8375746 LSH