Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0775 ATGGACTTTCTCCGCCGTCTCTTCGGCGGAAAGAAACACCCACCAGGTGCTTCTGCTGACGTGTCTAGACCAAAACCCAGCAAGGACAGGAAGAAGAAAAAGACAACCAAGGACAACTACAATAACCACAACCACTTTGACCCATCTGTTTCATCCTTGGACGCTAACAATCATGCCATCGCCGTCGCCGCTGCTACGGCCGCCGTAGCTGAGGCTGCTCTTGCAGCCGCGCATGCAGCTGCTAAGGTTGTCAGACTAACCAATGGAAGCGGGCCTGGTTCCAGCAGGAGGGACGCGGCGGCAGCCCGTGTTCAGCGGCAATTGGTGGAGGAAACCGCCGCCGTGAAAATACAGTCAGCGTTCCGTGGTTACTTGGCAAGGAGGGCATTGAGAGCACTTAAAGCATTAGTGAAGTTGCAAGCATTGGTGAGGGGCAATATTATAAGAAAGCAAACTTCTGATATGCTTAGGCGCATGCAAACATTGGTGCGACTGCAGACTCGGGCACGTGCAAGCCGTGTGCACTTGTCGAATAATATGCATACTTACAAGTCCTCACTCTGTCATTACCCTGTTCATGAAGATTATGAGCATTCACTTCGTGTCAATAGTACGAAATTTGATGGATCTTCTATCCTCAAGAGATGCAGTTCGAATGCAAATTTTAGGGACACCGACTTGGAGAGAGCCCGATTTGGTTCTAATTGGTTAGACAGTTGGATGGAAGAAAGTGCATGGAACCAAACCAGGGATTCTCCATTGAAAAATTTGCATAATGATGATGAGAAAAGTGACAAGATTCTTGAAGTAGATACTTGGAAGCCACACTTAAACTCTCACCATGGTAGCAGCAGCTCTTTTCAGACACCAAATCATTATTTACATACTCATTACAACAATGAAAATTTTACGGCATATGACTCCCCATCGAAACATTCTTCGAAGACTCTAAATCCAAGCCTCTCATCTAGAAAAGAAGCAGCTCCAAGAACTTCCGAGAATAGTCCACAAGCATTTTCTGCCTCGTCTAGGCTTGGAAGTGGATCAAGGAAGGGTCCCTTTACACCGACTAAGAGCGAGTGTTCGTGGGGTTTCTTCGGTGGCTACTCGAGTCATCCTAATTACATGGCATATACTGAATCTTCTAGAGCTAAGGTAAGGTCACAAAGTGCCCCAAGGCAAAGGCTGGAGTTTGACAGATATGGTTCCCTTAGTTCTTCTGTTCAGGGTCACGCGGATAATGCAAGGCTTAACTCGGATAGAGATTCTGATTTCAAGAGCAAAGGCTATTCAACTTCAAGTCACTTGAACAGAATTGGGAGCACCAATTTAAGGTGA 1338 0.4656 MDFLRRLFGGKKHPPGASADVSRPKPSKDRKKKKTTKDNYNNHNHFDPSVSSLDANNHAIAVAAATAAVAEAALAAAHAAAKVVRLTNGSGPGSSRRDAAAARVQRQLVEETAAVKIQSAFRGYLARRALRALKALVKLQALVRGNIIRKQTSDMLRRMQTLVRLQTRARASRVHLSNNMHTYKSSLCHYPVHEDYEHSLRVNSTKFDGSSILKRCSSNANFRDTDLERARFGSNWLDSWMEESAWNQTRDSPLKNLHNDDEKSDKILEVDTWKPHLNSHHGSSSSFQTPNHYLHTHYNNENFTAYDSPSKHSSKTLNPSLSSRKEAAPRTSENSPQAFSASSRLGSGSRKGPFTPTKSECSWGFFGGYSSHPNYMAYTESSRAKVRSQSAPRQRLEFDRYGSLSSSVQGHADNARLNSDRDSDFKSKGYSTSSHLNRIGSTNLR* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0775 445 SMART iq_5 109 131 IPR000048 GO:0005515
Lan13g0775 445 SMART iq_5 132 153 IPR000048 GO:0005515
Lan13g0775 445 MobiDBLite consensus disorder prediction 304 356 - -
Lan13g0775 445 PANTHER CALMODULIN-BINDING PROTEIN 1 443 - -
Lan13g0775 445 ProSiteProfiles IQ motif profile. 110 138 IPR000048 GO:0005515
Lan13g0775 445 MobiDBLite consensus disorder prediction 403 445 - -
Lan13g0775 445 MobiDBLite consensus disorder prediction 429 445 - -
Lan13g0775 445 MobiDBLite consensus disorder prediction 1 50 - -
Lan13g0775 445 Pfam IQ calmodulin-binding motif 113 131 IPR000048 GO:0005515
Lan13g0775 445 ProSiteProfiles IQ motif profile. 134 161 IPR000048 GO:0005515
Lan13g0775 445 Gene3D - 110 162 - -
Lan13g0775 445 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 155 IPR027417 -
Lan13g0775 445 PANTHER IQ-DOMAIN 5-RELATED 1 443 - -
Lan13g0775 445 Pfam Protein of unknown function (DUF4005) 335 440 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0775 Lan-Chr13 7983708 7990016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0775 1 411 IQD Protein Family AT5G62070 45.012 6.81e-58 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0775 - - gmx:100785181 522.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0927 7 8822559 8827795 Lan13g0775 13 7983708 7990016 LSH
Lan13g0775 13 7983708 7990016 Lan8g0806 8 10018978 10023231 PCT
Lan8g0806 8 10018978 10023231 Lan13g0775 13 7983708 7990016 PCT