Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0768 AATTGGGAACCTTCTTTTGCAATCACAACTGGAGCAGTTATCTGTGTTCTTCTCTTGTTAGGATTGATCTCAGTATACATCAGAAACTGCACAGATTCACAATACAACACTAGAACCAATAACACACTTGTTGGGACAAGCAACACATCACAAAGACCGTGTTCTTGTTCACAAGGCATCAACAAAGAACTCCTCAACACATTCCCAATCCTTTTCTATTCCACCATTAAGGATCTCAAGAAGGGAAAAGGGTCACTTGAATGTGCTGTTTGCTTGAGTGATTTCAAAGATTATGATTCCCTTAGGTTGCTTCCAAAATGCAACCACGTGTTTCACCCTTCATGCATACATTCTTGGCTATGCTCCCATGTAACGTGCCCTGTTTGTCGTGCCAATTTGAATGATTCATGTGAAGTTGCCATAACGGTGGAAACCCATTTGAGCACTCCCCAAAGGGTGCCAGAAAATCCAAGCTTTTTAGCAGAACACTTTGGTGGTGAAGAGAACAACAACAATAACCCAATAGAGCAAAACACAAACCAAGTTGTGAGTAACTTAAAGGAATGTGAGGGTAACAATGATTTTGGTTCACCAAAGTTGAAGCTTTTGAGGTCAAATACAACTGGTCATTCAGTTCTGGAATCAGAAAAGAATATGGAAAGGTACACACTTATGTTGCCAGAGGATATAAGGAAGTGCATTATTGTGAACCATAACCACTATGGAAGAAGGGTTCAGCGTTCAGCTAGCTACAACAACGATGTTATGATGCTAATGTTGGAGAGTTCGAGGAAATGTTGGAGTTACAGTGAAGAGTACAAAACATGA 828 0.4034 NWEPSFAITTGAVICVLLLLGLISVYIRNCTDSQYNTRTNNTLVGTSNTSQRPCSCSQGINKELLNTFPILFYSTIKDLKKGKGSLECAVCLSDFKDYDSLRLLPKCNHVFHPSCIHSWLCSHVTCPVCRANLNDSCEVAITVETHLSTPQRVPENPSFLAEHFGGEENNNNNPIEQNTNQVVSNLKECEGNNDFGSPKLKLLRSNTTGHSVLESEKNMERYTLMLPEDIRKCIIVNHNHYGRRVQRSASYNNDVMMLMLESSRKCWSYSEEYKT* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0768 275 Pfam Ring finger domain 87 130 IPR001841 -
Lan13g0768 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 139 IPR013083 -
Lan13g0768 275 PANTHER RING FINGER DOMAIN-CONTAINING 174 254 - -
Lan13g0768 275 PANTHER RING FINGER DOMAIN-CONTAINING 1 180 - -
Lan13g0768 275 SMART ring_2 88 129 IPR001841 -
Lan13g0768 275 SUPERFAMILY RING/U-box 87 134 - -
Lan13g0768 275 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 174 254 - -
Lan13g0768 275 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 180 - -
Lan13g0768 275 CDD RING-H2_EL5_like 87 130 - -
Lan13g0768 275 ProSiteProfiles Zinc finger RING-type profile. 88 130 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0768 Lan-Chr13 7843569 7844682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0768 4 235 Rapid Response to Elicitors AT3G05200 38.272 7.19e-48 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0768 K10664 - gmx:100782532 240.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0935 7 9006169 9007669 Lan13g0768 13 7843569 7844682 LSH
Lan8g1082 8 14030746 14032125 Lan13g0768 13 7843569 7844682 LSH