Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0762 ATGGGGGTGAAGCATTTGTGGGATATTCTCGAATCATGCAAGAAAACGGTGCCGCTTCATCATCTACAGAATAAGAAGGTGTGTGTGGATTTGTCTTGTTGGATGGTGCAGCTTCAGAATGTGAACAAATCTTACGTTGCTTCTAAAGATAAAGTGTACCTTAGAGGCCTCTTTCACCGCCTCAGAGCTCTCATTGCTCTCAATTGCAAAGTTGTTTTCGTTTCAGATGGGTCAATTCCTGCCATTAAATTAACAACTTATAGGCAACGCTTAAACGGCAGAAAGGAGGTATCAGAGAAGGAGAATGATGCTAACTCAAACAATGCTCCATCATTATCACAGAATGACACTAACTCGCAGAAAGTAACATCATTACGGAGAAATGCGGGGTCTGAGTTTTCTTGCATGATAAAAGAGGCTAAAGTCTTGGGGATGGTTCTTGGGGTCTCTTGTTTGAATGGGATTGAAGAAGCTGAAGCTCAATGTGCTTTGTTGAACAATGAGTTGTTGTGTGATGGATGTTTCAGTTCAGATTCAGATATATTCCTTTTTGGTGCAAGGACAGTGTACAGGGATATCTGCCTTGGGGATGGTGGATATGTTGTCTATTATGAGATGGCAGACATCGAAAGCAAACTTGGATTCGGAAGGAACTCATTGATCGCCCTCTCCTTACTTCTCGGCAGTGACTATTATCCTGGAGTTCATGGTCTGGGTCCAGAAACTGCTTGTCAGATAGTCAAATCAATTGGGGACAAACTCATTCTTCAAAAATTTGCTTCTGAAGGGCTTGGATGGGTGAAAAGAAGAAAAGGTGGTAAGAACACTTTAGAGAGGGATGGTGTCATTTTGCAAGTGATAAATGCTTATATGAAGCCAAAATGCCACTCAGCAGATTCAGATTGCGTGCAGAGGGCTCTTGCTCAGTATCCGTTTCAGCAAATTAAACTCCAGCAGATATGCACTGAATTCTTTGAGTGGCCTTCAGAGAGAACGGATGGCTATATCCTTCCCAATATTGCTGAAAGAGATTTACGGCGATTTGCTAATTTGCGTTTAACCTCATCTGAAGTTGGGCTCAACCCTCCTTTACATCAGATCCCTGTGAAGTGTCCTGTGTCAGAAATTATTAAGACCCGAAAAGTTCAAGGGAAAGAATGCTATGAAGTTTCTTGGGAAGAAATGGATGGACTTGAAACTTCAATAGTGCCTGCACATCTTTTACAAAGTGCCTGTCCGGAAAAGATTTCGGAGTTCGAGGAGAAAAAGGTTCAACGGAAGAAAGACAAGAAGCAAAATATTCAGAAAAGAAGACCAAAGAAAAATGAAACTTCTGAGCTTGATCTTAAACTTCAGAATTTATTGATAGATATCAATTTTGGAGATCAACACAACCACAATGCCTCTGAATCTGATTCTTCAAGAATGACACTAGGAGTTGCAGCAACCACAATGCCTATGCCTGAAGCTAATCTTAACACCACAGAATTGTTGCATCAATCACATGACATAGAACATAACTATTGGAGTCAGAATATGAGCAACATATCAAGTAGCAGTAATGCTTTTTCCACTTTAGATAAAAATGAGGTCATTGATCTTCTGAGCCCTTCACCACCTAAGCAATCACTTATTTCTTCAAAATTTCAACAATCAAGTAACCAAGTTATTGATGTGATTAATTTGAGTGACTCAGAATATGACATGTCACCTGAACACAATGAAAAAGCAAAGGAGTTGAGATTGTTCTTAGCAAGTATTAGAAACCATATCCATTGA 1779 0.4002 MGVKHLWDILESCKKTVPLHHLQNKKVCVDLSCWMVQLQNVNKSYVASKDKVYLRGLFHRLRALIALNCKVVFVSDGSIPAIKLTTYRQRLNGRKEVSEKENDANSNNAPSLSQNDTNSQKVTSLRRNAGSEFSCMIKEAKVLGMVLGVSCLNGIEEAEAQCALLNNELLCDGCFSSDSDIFLFGARTVYRDICLGDGGYVVYYEMADIESKLGFGRNSLIALSLLLGSDYYPGVHGLGPETACQIVKSIGDKLILQKFASEGLGWVKRRKGGKNTLERDGVILQVINAYMKPKCHSADSDCVQRALAQYPFQQIKLQQICTEFFEWPSERTDGYILPNIAERDLRRFANLRLTSSEVGLNPPLHQIPVKCPVSEIIKTRKVQGKECYEVSWEEMDGLETSIVPAHLLQSACPEKISEFEEKKVQRKKDKKQNIQKRRPKKNETSELDLKLQNLLIDINFGDQHNHNASESDSSRMTLGVAATTMPMPEANLNTTELLHQSHDIEHNYWSQNMSNISSSSNAFSTLDKNEVIDLLSPSPPKQSLISSKFQQSSNQVIDVINLSDSEYDMSPEHNEKAKELRLFLASIRNHIH* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0762 592 ProSiteProfiles Chromo and chromo shadow domain profile. 371 431 IPR000953 -
Lan13g0762 592 SMART xpgn3 1 97 IPR006085 GO:0004518
Lan13g0762 592 MobiDBLite consensus disorder prediction 103 121 - -
Lan13g0762 592 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 478 IPR006084 -
Lan13g0762 592 Pfam XPG N-terminal domain 1 96 IPR006085 GO:0004518
Lan13g0762 592 Gene3D - 2 214 - -
Lan13g0762 592 CDD H3TH_XPG-like 218 261 - -
Lan13g0762 592 Pfam XPG I-region 148 230 IPR006086 GO:0004518
Lan13g0762 592 SMART xpgineu 145 215 IPR006086 GO:0004518
Lan13g0762 592 MobiDBLite consensus disorder prediction 95 121 - -
Lan13g0762 592 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Lan13g0762 592 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Lan13g0762 592 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 144 161 IPR006084 -
Lan13g0762 592 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 165 185 IPR006084 -
Lan13g0762 592 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 220 235 IPR006084 -
Lan13g0762 592 Gene3D - 370 437 - -
Lan13g0762 592 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 215 352 IPR036279 -
Lan13g0762 592 Coils Coil 417 437 - -
Lan13g0762 592 MobiDBLite consensus disorder prediction 420 446 - -
Lan13g0762 592 Gene3D - 216 270 - -
Lan13g0762 592 CDD PIN_GEN1 2 213 - -
Lan13g0762 592 SUPERFAMILY Chromo domain-like 372 427 IPR016197 -
Lan13g0762 592 SUPERFAMILY PIN domain-like 3 230 IPR029060 -
Lan13g0762 592 PANTHER FLAP ENDONUCLEASE GEN HOMOLOG 1 1 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0762 Lan-Chr13 7720317 7728040 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0762 1 251 Core DNA Replication Machinery Family AT5G26680 26.792 8.73e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0762 K15338 - gmx:100806919 857.825