Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0719 ATGGTTTACTCTCAGGTTGATTTGGATGAAGATATAGACTACATGTTCAAGGTTGTTATGATTGGGGACTCTGGGGTTGGAAAGTCTCAACTTTTGAATAGGTTTGCCAAAAATGAATTCAACTTGAATTCCAAATCCACAATTGGAGTTGAATTTCTTACTAAGACTGTTGTTATGGATCACAAAGTTGTGAAGGCTCAGATTTGGGACACTGCTGGTCAAGAAAGGTACAAGGCAATTACAACCGCGTATTACAGAGGTGCAACTGGCGCTTTACTAGTGTATGACATAACCCGGCGCCCATCCTTCGATCATGTTGGAAAGTGGCTGGAGGAGCTACAGATACATGCCGATAAAAACATAATTATCATGCTTGTTGGCAACAAATCTGACCTGAGTTCTACTCGTGAAGTGCCGACCGATGTTGCTAAAGACTTTGCCCAGCAAGAGGGTCTATTCTTTTTTGAAACCTCAGCACTTGACTCGAATAATGTGGAGTCTGCTTTCTTTGGTCTCCTCTCACAAATATATGCAAATGTAAGCAAGAAGCACATCATTGCAGATAGACTCGAATCAAATCGGCACAAAGTAAACCTTGGACTTGAGGGAATAAAAATTAAGGTCCAATCTCAAGAACCTGAATGCCAGAAAACTAAAAGGAAATTCAATTGTTGCAATGTTTTTTAG 687 0.4032 MVYSQVDLDEDIDYMFKVVMIGDSGVGKSQLLNRFAKNEFNLNSKSTIGVEFLTKTVVMDHKVVKAQIWDTAGQERYKAITTAYYRGATGALLVYDITRRPSFDHVGKWLEELQIHADKNIIIMLVGNKSDLSSTREVPTDVAKDFAQQEGLFFFETSALDSNNVESAFFGLLSQIYANVSKKHIIADRLESNRHKVNLGLEGIKIKVQSQEPECQKTKRKFNCCNVF* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0719 228 SMART ras_sub_4 16 179 - -
Lan13g0719 228 TIGRFAM small_GTP: small GTP-binding protein domain 14 169 IPR005225 GO:0005525
Lan13g0719 228 CDD Rab11_like 13 177 - -
Lan13g0719 228 SMART rab_sub_5 16 179 - -
Lan13g0719 228 ProSiteProfiles small GTPase Ras family profile. 10 228 IPR001806 GO:0003924|GO:0005525
Lan13g0719 228 Pfam Ras family 17 177 IPR001806 GO:0003924|GO:0005525
Lan13g0719 228 ProSiteProfiles small GTPase Rab1 family profile. 11 225 - -
Lan13g0719 228 PANTHER RAB GTPASE-LIKE PROTEIN G3A 1 226 - -
Lan13g0719 228 PRINTS Transforming protein P21 ras signature 16 37 - -
Lan13g0719 228 PRINTS Transforming protein P21 ras signature 39 55 - -
Lan13g0719 228 PRINTS Transforming protein P21 ras signature 57 79 - -
Lan13g0719 228 PRINTS Transforming protein P21 ras signature 119 132 - -
Lan13g0719 228 PRINTS Transforming protein P21 ras signature 154 176 - -
Lan13g0719 228 SMART rho_sub_3 18 174 IPR001806 GO:0003924|GO:0005525
Lan13g0719 228 SMART ran_sub_2 21 222 - -
Lan13g0719 228 Gene3D - 9 225 IPR027417 -
Lan13g0719 228 PANTHER - 1 226 - -
Lan13g0719 228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 184 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0719 Lan-Chr13 7094449 7097417 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0719 K07904 - gmx:100789008 356.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1255 8 18884338 18886555 Lan13g0719 13 7094449 7097417 LSH