Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0620 ATGACTTGTTTTCCTTTATTATGTGGTAAGAAGGTGTCTTCTGTAGCTAGACGAGATCCAGACATAGATGAAGGCCTTCAAAACGTAAGAATCTTCACCTACAAAGAATTAAGAAATGCCTGTGATAATTTCAGTTCAGCCAATAAAATCGGCGAGGGTGGTTTTGGTTCTGTCTATAAGGGATTGTTGAGAGACGGAAATGCTGCTGCTATAAAAGTTCTTTCAGCTGAATCAAGACAAGGGGTGAGGGAATTCTTGACAGAGATTAACGTGATATCGGAAATAGAGCATGAAAATTTGGTTAAGTTGTATGGTTGTTGTGTGGAAGGAGATCAAAGAATATTAGTCTACAATTACCTTGAGAACAATAGCCTTGCACAAACCCTTCTAGGTGGAGGTTACAGTGATATTCAGTTCAATTGGAGAACACGAAGTAGGATATGCATTGGGGTTGCTCGTGGTCTTGCCTTTCTTCACGAGGAAGTAAGACCACATATTGTTCATAGGGATATAAAAGCAAGCAATATTCTTCTTGACAAAGACCTTATACCCAAGATTTCAGATTTTGGTCTTGCAAAGCTTATTCCGTCACACTTGACTCATGTCAGCACACGTGTAGCAGGAACAATCGGTTATTTGGCACCGGAATATGCAATAAGGGGGCAATTGACACGAAAAGCAGATATTTACAGCTTCGGTGTCCTTCTTGTGGAGATAGTCAGTGGAAGATGTAACATAAATGCAAGATTACCTATAGGAGATCAATTCATTCTGGAAAAGACATGGGAGCTTTATGAGCAGGGGGAATTGGTAGGGCTGGTAGACATATCACTAAACGGCTTCTTCGATGCCGAAGAAGCTTGTAGGATTCTGAAGATTGCCCTTCTTTGCACTCAAGATAATCCAAAACTCAGGCCATCCATGTCTTCTGTGGTTAAGATGCTCATTGGAGAAATTGATGTTGGTGAAAGTAAGATAACAAAACCAAGCTTGATATCAGATATTATGGACCTCAAAGTCAAAGAACAAAAAGGTAATGATGATATGAAGATTTCATCTTCATACAGTGCATCCTCTGCCTCAGACAGCCAGGGTAATACTATGTCATTTGCTGCAAATACAACCTTCACTGTACAATATGATTAA 1146 0.3979 MTCFPLLCGKKVSSVARRDPDIDEGLQNVRIFTYKELRNACDNFSSANKIGEGGFGSVYKGLLRDGNAAAIKVLSAESRQGVREFLTEINVISEIEHENLVKLYGCCVEGDQRILVYNYLENNSLAQTLLGGGYSDIQFNWRTRSRICIGVARGLAFLHEEVRPHIVHRDIKASNILLDKDLIPKISDFGLAKLIPSHLTHVSTRVAGTIGYLAPEYAIRGQLTRKADIYSFGVLLVEIVSGRCNINARLPIGDQFILEKTWELYEQGELVGLVDISLNGFFDAEEACRILKIALLCTQDNPKLRPSMSSVVKMLIGEIDVGESKITKPSLISDIMDLKVKEQKGNDDMKISSSYSASSASDSQGNTMSFAANTTFTVQYD* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0620 381 PIRSF TyrPK_CSF1-R 145 257 - -
Lan13g0620 381 PIRSF TyrPK_CSF1-R 42 123 - -
Lan13g0620 381 PIRSF TyrPK_CSF1-R 282 378 - -
Lan13g0620 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Lan13g0620 381 ProSiteProfiles Protein kinase domain profile. 44 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan13g0620 381 SUPERFAMILY Protein kinase-like (PK-like) 25 315 IPR011009 -
Lan13g0620 381 PANTHER - 2 366 - -
Lan13g0620 381 CDD STKc_IRAK 50 315 - -
Lan13g0620 381 ProSitePatterns Protein kinases ATP-binding region signature. 50 72 IPR017441 GO:0005524
Lan13g0620 381 Pfam Protein kinase domain 46 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan13g0620 381 Gene3D Transferase(Phosphotransferase) domain 1 120 326 - -
Lan13g0620 381 Gene3D Phosphorylase Kinase; domain 1 15 119 - -
Lan13g0620 381 SMART serkin_6 44 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan13g0620 381 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0620 Lan-Chr13 5078990 5083413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0620 32 368 Receptor kinase-like Gene Family AT1G53430 53.824 3.99e-113 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lan13g0620 Pkinase 7.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0620 - - gmx:100800503 591.267