Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0617 ATGGCTGCGGTTGCTGAGATTTCTGCTGATGCAGTAGTTCCTGCTCCAACCAAATTGGACCTTAAACCAAAGCCTGATGAATCTGAATTCAATGTGCAAAATTTAGTTGACATGCTCAAAAAGTTGAATCCTTTGGCTGAGGAGTTTTTTCCTTCATCTTATTCTCAACATGATCATGCTTATAAGAGTTATAACCAGTTCCTACCCAACAATTTTGTGGCCCCCAACATGCCCTTAGTTAATGGTCATAACCCAAACAACGGAAGGAGAAGAGGTAATTTTATCCATGGTCGTGGAGAGAGAAGGGTGAGTGCTAGATCACCTAAGCCTGAGAGGGAAGGTAGCGTTAGAAGGACAGTGTATGTTTCTGAAGTTGAGCAAGATGTAACTGAGGAGAGCCTTGCTTCCTTGTTTAGTACTTGTGGGCAAGTGATTGATTGCCGAATTTGTGGTGATCCTCATTCAGTTCTTCGCTTTGCATTTGTAGAGTTCACTGATGAGCATGATGCAAGGGCAGCTTTAAGCCTCAATGGTACCCTGCTTGGATCCTTTCCAGTCAAGGTCCTTCCCTCAAAAACTGCTATCCTTCCTGTGAATCCTACATTCCTCCCTAGGTCAGGTGATGAACGTGAAATGTGTACAAGGACTGTCTACTGCACAAACATTGATAAGAAGATTTCTCAAGCTGAAGTCAAGCAGTTTTTTGAATCATCTTGTGGGGAGGTCACTCGCTTGAGGCTTTTAGGAGATCATCAGCATTTAAATCGAATTGCTTTTGTGGAGTTTGCAATGGCCGAAAGTGCCATTCTTGCTCTTGGTTGCAGTGGGATGATGTTGGGAATCCAGCCAGTCAGGGTAAGTCCTTCGAAGACTCCAGTGAGGCCAAGGGTCACTGGTCCTACAGGGAAAAACTGA 915 0.4426 MAAVAEISADAVVPAPTKLDLKPKPDESEFNVQNLVDMLKKLNPLAEEFFPSSYSQHDHAYKSYNQFLPNNFVAPNMPLVNGHNPNNGRRRGNFIHGRGERRVSARSPKPEREGSVRRTVYVSEVEQDVTEESLASLFSTCGQVIDCRICGDPHSVLRFAFVEFTDEHDARAALSLNGTLLGSFPVKVLPSKTAILPVNPTFLPRSGDEREMCTRTVYCTNIDKKISQAEVKQFFESSCGEVTRLRLLGDHQHLNRIAFVEFAMAESAILALGCSGMMLGIQPVRVSPSKTPVRPRVTGPTGKN* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0617 304 Gene3D - 203 296 IPR012677 -
Lan13g0617 304 Gene3D - 84 194 IPR012677 -
Lan13g0617 304 CDD RRM1_CID8_like 116 195 IPR034823 -
Lan13g0617 304 MobiDBLite consensus disorder prediction 82 115 - -
Lan13g0617 304 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 280 IPR000504 GO:0003723
Lan13g0617 304 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 186 IPR000504 GO:0003723
Lan13g0617 304 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 193 IPR000504 GO:0003723
Lan13g0617 304 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 300 - -
Lan13g0617 304 MobiDBLite consensus disorder prediction 93 115 - -
Lan13g0617 304 SMART rrm1_1 119 189 IPR000504 GO:0003723
Lan13g0617 304 SMART rrm1_1 216 287 IPR000504 GO:0003723
Lan13g0617 304 SUPERFAMILY RNA-binding domain, RBD 206 297 IPR035979 GO:0003676
Lan13g0617 304 SUPERFAMILY RNA-binding domain, RBD 87 191 IPR035979 GO:0003676
Lan13g0617 304 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 291 IPR000504 GO:0003723
Lan13g0617 304 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 9 1 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0617 Lan-Chr13 5035500 5040133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0617 93 272 Eukaryotic Initiation Factors Gene Family AT1G34140 25.000 1.30e-11 62.8