Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0614 ATGGATTCCTCTTCCTTCAACCACTTACCTCCTCTCAAGAGACTTCGATTCATTCACCAACAACAACAACAACAACAACACTGTGCTTCTTCTAATTCAACCTTACCTGCCAAGAAGCGTAAAGAATCTCGCGACTCTACTTTTTTTCACAACCCACCAAATCCTTTTCCCACCACCCTTTATTCCCTTCCCGCTAAGAAAAGGGTATGCGCTTTTCACCCATGCGACACCGTTTCACTACCCTTTGACTTAAACGTCGAATACTCACCTTCACCGAAAAAACCGATCAAAAAAATCCAGACTTTCACAAACCCCTCTCCCCAAAAAGAAAAACTAGATCTTGATGATGTTGAAAATGAAATTGATGAAGATGATGGGATATTATGCTGTGTGTGCCAGAGCACAGACGGTGACCCTGAAGATCCAATCGTTTTTTGCGACGGTTGCGATCTTATGGTACACGCTTCATGCTATGGTAACCCTCTCTCAAAGGGTATCCCAGAAGGTGATTGGTTCTGTGAACGGTGTCGTTTTGATGAGAAAACTGGGTCTTCTTTCTCATGTTGCTTATGTCCTATTAAGGAGGGTGCAATGAAACGAACCACAGATAGCCGTTGGGCCCACATAGTGTGTGCTGTGTTTGTTCCTGAAGTGTTTTTCTCTGACCCAGAAGGGAGGGAAGGGATCGATTGTTCCAAGGTTCCGAAGAAGAGGTGGTCGGAAAAGTGTTATGTTTGTGACACGCGTGATGGGTGTGCTCTTATGTGCTCTGAAATCAAGTGTGGTTTGGGTTTTCATGTTACGTGTGGAGTGAGAGAGGATCTTTGCATTGAGTATAAGGAAGGGAAGAAAGGTGACACCATTGTTGCTGGGTTTTGCAAATCCCACTCTCAAATATGGGAAAAGCAACAGCTATCAGGAAAATACAAAATCGTTGCAATTGAAGATAAAAAGTAG 957 0.4357 MDSSSFNHLPPLKRLRFIHQQQQQQQHCASSNSTLPAKKRKESRDSTFFHNPPNPFPTTLYSLPAKKRVCAFHPCDTVSLPFDLNVEYSPSPKKPIKKIQTFTNPSPQKEKLDLDDVENEIDEDDGILCCVCQSTDGDPEDPIVFCDGCDLMVHASCYGNPLSKGIPEGDWFCERCRFDEKTGSSFSCCLCPIKEGAMKRTTDSRWAHIVCAVFVPEVFFSDPEGREGIDCSKVPKKRWSEKCYVCDTRDGCALMCSEIKCGLGFHVTCGVREDLCIEYKEGKKGDTIVAGFCKSHSQIWEKQQLSGKYKIVAIEDKK* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0614 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 182 IPR013083 -
Lan13g0614 318 SMART PHD_3 128 177 IPR001965 -
Lan13g0614 318 SMART PHD_3 242 297 IPR001965 -
Lan13g0614 318 CDD PHD_BRPF_JADE_like 128 176 - -
Lan13g0614 318 ProSiteProfiles Zinc finger PHD-type profile. 126 179 IPR019787 -
Lan13g0614 318 MobiDBLite consensus disorder prediction 18 36 - -
Lan13g0614 318 Pfam PHD-finger 129 178 IPR019787 -
Lan13g0614 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 299 IPR013083 -
Lan13g0614 318 MobiDBLite consensus disorder prediction 18 51 - -
Lan13g0614 318 SUPERFAMILY FYVE/PHD zinc finger 115 193 IPR011011 -
Lan13g0614 318 PANTHER PHD FINGER PROTEINS 121 302 - -
Lan13g0614 318 PANTHER PHD FINGER PROTEINS 2 96 - -
Lan13g0614 318 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 2 96 - -
Lan13g0614 318 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 121 302 - -
Lan13g0614 318 Pfam PHD-zinc-finger like domain 187 296 - -
Lan13g0614 318 ProSiteProfiles Extended PHD (ePHD) domain profile. 185 297 IPR034732 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0614 Lan-Chr13 5017700 5019149 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0614 20 318 C2H2 Transcription Factor Family AT3G14740 55.000 4.06e-114 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan13g0614 zf-HC5HC2H_2 1.5e-28 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0614 K11380 - gmx:100802652 383.645