Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0610 ATGGCACTGCTATGTGGTTCAACTTCTTTAACCTTCCCTTCACATTCTCTCTCTTCTCAATTCAAGAATGCTACTTCTAAATCTTCTTCCTTTTCCTCCTTCCAATTCTCACTACCAAATCTTTCATTATCATCAACTTCTTCTTCACTTTCTTATTCTTTTCAGACCCATTTCCCTTCCACAAATTTCACTCTCCATTCCGAGCTTCAGGAACAAGAACCAGAACTAGAACTGGAAGAGGAAGAAGTAGAAGATGACCCACGTTTCATGTGCGTTGAACCCGAACCTCGATTCAGTGGCCCGGATATTTGGAACACGACCTGGTATCCAAAAGCTGCAGATCATGTGAATACAGAGAAAACATGGTATGTTGTTGATGCTACAGACAAAGTTCTTGGAAGGCTCGCGTCAACGATTGCTATTCATATCAGAGGAAAAAATCTAGCAACCTTTACTCCCAGTGTTGACATGGGTGCATTTGTAATTGTGGTGAATGCTGAAAAGGTTGCTGTATCCGGAAAAAAGAGGACCCAAAAGGTTTACCGGAGGCACTCTGGGCGACCAGGTGGTATGACAGTAGAGACATTTGCCCAGCTGCAGAACAGGATTCCAGAAAGAATTATTGAGCATGCTGTTCGTGGCATGCTTCCTAAAGGAAGGCTTGGCAGAAGACTATTCACCCACCTGAAGGTCTACAAGGGCCCAGAGCATCCTCATGCAGCGCAGAAACCCATTGACTTGCCTATAAAGGATAAGAGAATACAGTTGGTGAGATAG 777 0.4389 MALLCGSTSLTFPSHSLSSQFKNATSKSSSFSSFQFSLPNLSLSSTSSSLSYSFQTHFPSTNFTLHSELQEQEPELELEEEEVEDDPRFMCVEPEPRFSGPDIWNTTWYPKAADHVNTEKTWYVVDATDKVLGRLASTIAIHIRGKNLATFTPSVDMGAFVIVVNAEKVAVSGKKRTQKVYRRHSGRPGGMTVETFAQLQNRIPERIIEHAVRGMLPKGRLGRRLFTHLKVYKGPEHPHAAQKPIDLPIKDKRIQLVR* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0610 258 SUPERFAMILY Ribosomal protein L13 116 250 IPR036899 GO:0003735|GO:0005840|GO:0006412
Lan13g0610 258 Pfam Ribosomal protein L13 120 238 IPR005822 GO:0003735|GO:0005840|GO:0006412
Lan13g0610 258 Hamap 50S ribosomal protein L13 [rplM]. 122 246 IPR005822 GO:0003735|GO:0005840|GO:0006412
Lan13g0610 258 TIGRFAM rplM_bact: ribosomal protein uL13 116 247 IPR005823 GO:0003735|GO:0005840|GO:0006412
Lan13g0610 258 Coils Coil 66 86 - -
Lan13g0610 258 Gene3D Ribosomal protein L13 111 255 IPR036899 GO:0003735|GO:0005840|GO:0006412
Lan13g0610 258 CDD Ribosomal_L13 122 235 IPR005822 GO:0003735|GO:0005840|GO:0006412
Lan13g0610 258 PANTHER RIBOSOMAL PROTEIN L13 79 256 IPR005822 GO:0003735|GO:0005840|GO:0006412
Lan13g0610 258 PANTHER 50S RIBOSOMAL PROTEIN L13, CHLOROPLASTIC-LIKE 79 256 - -
Lan13g0610 258 ProSitePatterns Ribosomal protein L13 signature. 212 234 IPR023563 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0610 124 248 Cytoplasmic Ribosomal Protein Gene Family AT3G07110 31.746 1.41e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0610 K02871 - gmx:100305981 346.28