Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0597 ATGTCACATTCCGATAAATCTGTTTCCGAGTTAGGTCTCGGTTCACTCAGTAACCGCTTCCGTGACTCACTCAGTTGCGAGGCTAACAAACCCGATTTCCGAGAGCTCCATCTCGCTTCACCTGTTTCGCCATTGCGGACTCGCCACCACCGTAGTGCAACCGCACCCGCCACCAGTAGCAGCAGTTCCGGTTCATCTGGTTCGGTTTCTGGTCGAACCGGACATAACCCGATTACGAAGAGATCCGATTCCGGCGAGCTTTCCGGTTCCAGCGAGAACAATAGTCCTACCGCGGCTGCCGGAAATGGTCACCGAAGCTTTAAATCAGGTTCAAGATCCGATTCGGGTTCGGGTTCATCGCAGCCGTTGATATATTCTGGTCAAATTCAAAGATCTCAGTCATCCTCTTCCTCCGCTGTAAATTCGCCGCCGTTGAATGTACTTCCCGCCGGAAACATATGCCCCTCCGGCAGGGTTCTTAAATCCAGCATGACAGCGGCATCGGCTATCCGGAGCTCCAGGCCTGATGTTTTGGGCACCGGCACGGGGAATTACGGCCACGGAAGCATAATGCGGGGCGGCGGCAAAAGTGGCAGCAAAGGCGGAGACGGTGTTCCAAATGTGAGGGTCAGTGGTAGTGAATCAGTGAAGAGAGGAGTGGAGAGTGTGGATCCAGAAGAAGTGAAGAGAGCAGGGAATGAACAGTATAAGAGGGGTCATTTTTCAGAGGCATTGTCTTTGTATGATCGAGCAATTGCATTGTCTCCGTCGAATGCCGCCTATCGGAGCAACCGGGCCGCGGCATTGACCGGTTTAGGAAGGTTGGGAGAGGCAGTGAGGGAGTGTGAGGAGGCTGTGAGGTTGGATCATAATTATGGAAGGGCACATCACCGTTTGGCTACTCTTTTTCTCAGGTTAGGACAAGTAGAGAATGCTAGGAAGCACTTATGTTATCGCGGGTTGCAGCCAGATCCTTTTGAGTTGCAGAAGTTACAAATAGTGGAAAAGCATATTAGCAAATGTGTAGATATGCGGAGGATAAGAGAGTGGAAAAGTGTTCTGAGGGAAGTTGATGCTGCTATTGCTAATGGAGCCGACTCTTCTATTCAGCTCTTTATGTGTAGAGCAGAAGCGTTTTTGAAGCTGCACCAAATTGATGATGCGGATTCAAGTTTTTTACATATTCCCAAATGGGAATCACATACCATTTCCCTATCGCAGGCAAGATTTTTTGGGATGCTTTCCGAAGCTTATTGCTACTTTGTTAGAGCACAGATTGACATGGCTTTTGGAAGGTTTGAGAATGCAGTTGCAGCTGCTGAGAAAGCTAGTCAGATTGATCCCCGGAATGTTGAAGTTGCAGTTTTGCTCAACAATGTAAGGATGGTGGCAAGAGCTCGAGTGCGTGGCAATGATCTTTTCAAATCAGAAAGATTCACCGAGGCATGCTCAGCATATGGTGAAGGTTTGAGGCTTGACCCTTCAAACTCTGTTCTTTATTGCAACAGAGCAGCATGTTGGTTTAAGCTTGGAGAATGGGAAAGATCAATTGAAGACTCCAATCAAGCTTTACGTATCCAACCAAATTACAAAAAAGCCCTTCTTCGAAGGGCTGCATCAAATATCAAGCTAGAAAGATGGGCAGAAGCAGTAAAGGATTATGAGGACTTAAGGAGAGAACTTCCAGATGACAATGAAGTTGCTGAAGCTCTATTTCATGCAGTTGTTGCATTAAAGAAATCCCGTGGGGAAGAAGTACATAATTTAAAATTTGGTGGTGAAGTAGAGGCCATATCAAGTCTGGAGCAGTTTAGAGCTGCAATATCTTTATCAGGTGTTTCTGTTGTCCATTTTCGAACCCCCTCAAACTTGCAATGCAAGCAAATATCACCGTTTGTGGATACACTATGTGGCCGCCATCCATCTATTAACTTCCTCAAGGTGGATATTGAAGAAAACCCAACAGTTGCAACTGCTGAGAATGTTAGGATTGTACCAACCTTCAAGATCTACAAAAATGGCAGTCTAGTGAAGGAAATTGTATGCCCTGGTCGTGATATGTTGGAACACTCCATTAAGCCCTACAGCATTTAG 2094 0.467 MSHSDKSVSELGLGSLSNRFRDSLSCEANKPDFRELHLASPVSPLRTRHHRSATAPATSSSSSGSSGSVSGRTGHNPITKRSDSGELSGSSENNSPTAAAGNGHRSFKSGSRSDSGSGSSQPLIYSGQIQRSQSSSSSAVNSPPLNVLPAGNICPSGRVLKSSMTAASAIRSSRPDVLGTGTGNYGHGSIMRGGGKSGSKGGDGVPNVRVSGSESVKRGVESVDPEEVKRAGNEQYKRGHFSEALSLYDRAIALSPSNAAYRSNRAAALTGLGRLGEAVRECEEAVRLDHNYGRAHHRLATLFLRLGQVENARKHLCYRGLQPDPFELQKLQIVEKHISKCVDMRRIREWKSVLREVDAAIANGADSSIQLFMCRAEAFLKLHQIDDADSSFLHIPKWESHTISLSQARFFGMLSEAYCYFVRAQIDMAFGRFENAVAAAEKASQIDPRNVEVAVLLNNVRMVARARVRGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGEWERSIEDSNQALRIQPNYKKALLRRAASNIKLERWAEAVKDYEDLRRELPDDNEVAEALFHAVVALKKSRGEEVHNLKFGGEVEAISSLEQFRAAISLSGVSVVHFRTPSNLQCKQISPFVDTLCGRHPSINFLKVDIEENPTVATAENVRIVPTFKIYKNGSLVKEIVCPGRDMLEHSIKPYSI* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0597 697 MobiDBLite consensus disorder prediction 165 179 - -
Lan13g0597 697 MobiDBLite consensus disorder prediction 1 20 - -
Lan13g0597 697 Pfam Thioredoxin 601 683 IPR013766 -
Lan13g0597 697 Gene3D Glutaredoxin 589 696 - -
Lan13g0597 697 MobiDBLite consensus disorder prediction 52 145 - -
Lan13g0597 697 SUPERFAMILY Thioredoxin-like 500 694 IPR036249 -
Lan13g0597 697 ProSiteProfiles TPR repeat profile. 417 450 IPR019734 GO:0005515
Lan13g0597 697 Pfam Tetratricopeptide repeat 419 450 IPR019734 GO:0005515
Lan13g0597 697 MobiDBLite consensus disorder prediction 219 235 - -
Lan13g0597 697 Gene3D Tetratricopeptide repeat domain 223 583 IPR011990 GO:0005515
Lan13g0597 697 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 13 693 - -
Lan13g0597 697 Pfam Tetratricopeptide repeat 469 529 - -
Lan13g0597 697 ProSiteProfiles TPR repeat profile. 225 258 IPR019734 GO:0005515
Lan13g0597 697 CDD TRX_family 602 693 - -
Lan13g0597 697 Pfam TPR repeat 232 273 - -
Lan13g0597 697 SUPERFAMILY TPR-like 225 453 IPR011990 GO:0005515
Lan13g0597 697 MobiDBLite consensus disorder prediction 28 147 - -
Lan13g0597 697 SMART tpr_5 463 496 IPR019734 GO:0005515
Lan13g0597 697 SMART tpr_5 417 450 IPR019734 GO:0005515
Lan13g0597 697 SMART tpr_5 531 564 IPR019734 GO:0005515
Lan13g0597 697 SMART tpr_5 259 292 IPR019734 GO:0005515
Lan13g0597 697 SMART tpr_5 225 258 IPR019734 GO:0005515
Lan13g0597 697 SMART tpr_5 497 530 IPR019734 GO:0005515
Lan13g0597 697 MobiDBLite consensus disorder prediction 165 235 - -
Lan13g0597 697 ProSiteProfiles TPR repeat profile. 497 530 IPR019734 GO:0005515
Lan13g0597 697 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 13 693 IPR044534 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0597 Lan-Chr13 4826618 4830084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0597 462 533 U-box Gene Family AT3G07370 37.500 1.04e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0597 - - adu:107459775 951.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1354 8 20342982 20346692 Lan13g0597 13 4826618 4830084 LSH
Lan19g0139 19 1216144 1219976 Lan13g0597 13 4826618 4830084 PCT
Lan5g0885 5 21853020 21856990 Lan13g0597 13 4826618 4830084 PCT
Lan9g0250 9 3259133 3262944 Lan13g0597 13 4826618 4830084 PCT