Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0558 ATGGCGATGAAGGCAGCAGTGGCGGCGGCACCCCGTGGTTTGAGGCGTTTTTTCTGCACAAACCCAACTTCTTCTTCTACTTTCCCGTTCGTTCCTCCGCCGGCTGCCGGGGCCACTTCCGCTCGACAGATGGCGGACCCCAACACCAACCTCTTCGTATCCGGGCTTAGCAAACGTACTACCACAGAAAGGTTACGGGAAGAATTTGCAAAGTTTGGTGAAGTTGTTCATGCTAGGGTGGTAACAGATAGAGTATCAGGTTACTCTAAAGGGTTTGGTTTTGTGAAATATGCTACTATTGACGAGGCTGCAAAGGGCATCGAGGGCATGGATGGCAAGTTTTTGGATGGTTGGGTTATATTTGCGGAGTATGCAAGACCAAGACCACCACCGGGACAACCTGTAGATAATCCCACTCCTTATTATGGCGGCCGGTGA 438 0.5114 MAMKAAVAAAPRGLRRFFCTNPTSSSTFPFVPPPAAGATSARQMADPNTNLFVSGLSKRTTTERLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIDEAAKGIEGMDGKFLDGWVIFAEYARPRPPPGQPVDNPTPYYGGR* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0558 145 SUPERFAMILY RNA-binding domain, RBD 28 144 IPR035979 GO:0003676
Lan13g0558 145 SMART rrm1_1 50 123 IPR000504 GO:0003723
Lan13g0558 145 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
Lan13g0558 145 MobiDBLite consensus disorder prediction 126 145 - -
Lan13g0558 145 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 117 IPR000504 GO:0003723
Lan13g0558 145 Gene3D - 31 133 IPR012677 -
Lan13g0558 145 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL-LIKE 1 142 - -
Lan13g0558 145 PANTHER TRANSFORMER-2-RELATED 1 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0558 Lan-Chr13 4316229 4318908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0558 50 126 Eukaryotic Initiation Factors Gene Family AT2G23350 38.961 3.37e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0558 - - gmx:100789351 216.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0557 7 4206637 4209455 Lan13g0558 13 4316229 4318908 LSH