Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0552 ATGGTTTCCCGGGAAAACACGAATTGGATTTTGGAATTCGGGTTGATTGAAGATATTCCTGTCCCTGATTCAACCTTCAATTGGGCCCCACAACCCTTCAACCCTTCTTCTAATGTTAGTGTTGAAATTGATGGCACATTGGGGGATTCTGGTGGTCTCAAAGAGTCCGGTTCAAAGAAGAGGGTTAGATCTGAGGCATGTACTGCTTCTAGCTCCAAAGCATGTCGGGAGAAGTTGCGGAGGGATAGGCTCAATGACAAGTTTATTGAATTAGGCTCCATTTTGGAGCCCGGAAGGCCTCCAAAAACAGATAAGGCTGCTATCCTGATTGATGCTGTCCATATGGTGACACAGTTACGAGGTGAAGCCCAGAAGTTGAAAGATTCAAATATGGGTCTTCAAGAAAAGATTAAAGATTTAAAGGCTGAGAAAAATGAACTTCGTGATGAGAAACAGAGGCTGAAGGCAGAGAAAGAGAGGTTGGAGCAGCAACTAATGTCTATGAATGCACAACCTAGTTTCTTGCCTCCCCCCGCTGCAATCCCTGCCGCTTTTGCTCCACAAGGCCAAGCCCCTGGCAACAAGTTGGTACCTTTTATTAGTTATCCAGGAGTTGCAATGTGGCAATTTATGCCACCCGCTTCAGTGGATACCTCACAGGATCATGTACTCCGTCCGCCAGTTGCCTAA 690 0.4609 MVSRENTNWILEFGLIEDIPVPDSTFNWAPQPFNPSSNVSVEIDGTLGDSGGLKESGSKKRVRSEACTASSSKACREKLRRDRLNDKFIELGSILEPGRPPKTDKAAILIDAVHMVTQLRGEAQKLKDSNMGLQEKIKDLKAEKNELRDEKQRLKAEKERLEQQLMSMNAQPSFLPPPAAIPAAFAPQGQAPGNKLVPFISYPGVAMWQFMPPASVDTSQDHVLRPPVA* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0552 229 SMART finulus 74 125 IPR011598 GO:0046983
Lan13g0552 229 MobiDBLite consensus disorder prediction 45 65 - -
Lan13g0552 229 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 229 - -
Lan13g0552 229 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 136 IPR036638 GO:0046983
Lan13g0552 229 CDD bHLH_AtILR3_like 73 148 - -
Lan13g0552 229 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 68 119 IPR011598 GO:0046983
Lan13g0552 229 PANTHER BHLH TRANSCRIPTION FACTOR 1 229 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Lan13g0552 229 Pfam Helix-loop-helix DNA-binding domain 72 119 IPR011598 GO:0046983
Lan13g0552 229 Gene3D - 71 149 IPR036638 GO:0046983
Lan13g0552 229 Coils Coil 116 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0552 Lan-Chr13 4263291 4266830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0552 1 229 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 70.763 8.22e-111 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan13g0552 HLH 1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0552 - - gmx:100788858 373.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1432 8 21466007 21468266 Lan13g0552 13 4263291 4266830 LSH